Lineage for d6f5ra_ (6f5r A:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2404954Family b.82.2.14: Histone demethylase core [254153] (4 proteins)
    Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801
  6. 2405080Protein automated matches [254635] (1 species)
    not a true protein
  7. 2405081Species Human (Homo sapiens) [TaxId:9606] [255633] (266 PDB entries)
  8. 3061047Domain d6f5ra_: 6f5r A: [361109]
    automated match to d5ph7a_
    complexed with cl, cqz, edo, ni, so4, zn

Details for d6f5ra_

PDB Entry: 6f5r (more details), 1.61 Å

PDB Description: crystal structure of kdm4d with gf028 ligand
PDB Compounds: (A:) Lysine-specific demethylase 4D

SCOPe Domain Sequences for d6f5ra_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6f5ra_ b.82.2.14 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwk

SCOPe Domain Coordinates for d6f5ra_:

Click to download the PDB-style file with coordinates for d6f5ra_.
(The format of our PDB-style files is described here.)

Timeline for d6f5ra_:

  • d6f5ra_ appears in periodic updates to SCOPe 2.07 starting on 2018-12-13