Lineage for d5z5nd_ (5z5n D:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2373039Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. 2373040Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families) (S)
  5. 2373041Family b.29.1.1: Legume lectins [49900] (5 proteins)
  6. 2373045Protein Concanavalin A [49901] (4 species)
    natural circle permutation: the "old" N- and C-termini are linked with a peptide bond, whereas the "new" ones correspond to a cleaved loop
  7. 2373066Species Jack bean (Canavalia ensiformis) [TaxId:3823] [49902] (64 PDB entries)
    Uniprot P81461
  8. 3060054Domain d5z5nd_: 5z5n D: [360116]
    automated match to d1nlsa_
    complexed with ca, man, mn

Details for d5z5nd_

PDB Entry: 5z5n (more details), 2.04 Å

PDB Description: crystal structure of cona-r1m
PDB Compounds: (D:) Concanavalin-A

SCOPe Domain Sequences for d5z5nd_:

Sequence, based on SEQRES records: (download)

>d5z5nd_ b.29.1.1 (D:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]}
tivaveldtypntdigdpsyphigidiksvrskktakwnmqngkvgtahiiynsvdkrls
avvsypnadsatvsydvdldnvlpewvrvglsastglyketntilswsftsklksnsthe
tnalhfmfnqfskdqkdlilqgdattgtdgnleltrvssngspqgssvgralfyapvhiw
essavvasfeatftflikspdshpadgiaffisnidssipsgstgrllglfpdan

Sequence, based on observed residues (ATOM records): (download)

>d5z5nd_ b.29.1.1 (D:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]}
tivaveldtypntdigdpsyphigidiksvrskktakwnmqngkvgtahiiynsvdkrls
avvsypnadsatvsydvdldnvlpewvrvglsastglyketntilswsftsklktnalhf
mfnqfskdqkdlilqgdattgtdgnleltrvssngspqgssvgralfyapvhiwessavv
asfeatftflikspdshpadgiaffisnidssipsgstgrllglfpdan

SCOPe Domain Coordinates for d5z5nd_:

Click to download the PDB-style file with coordinates for d5z5nd_.
(The format of our PDB-style files is described here.)

Timeline for d5z5nd_:

  • d5z5nd_ appears in periodic updates to SCOPe 2.07 starting on 2018-11-08