Lineage for d6erma1 (6erm A:1-147)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2326304Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
    core: 5 helices; bundle
  4. 2326305Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families) (S)
  5. 2326306Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)
  6. 2326345Protein HIV-1 capsid protein [47945] (1 species)
  7. 2326346Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (64 PDB entries)
  8. 3059773Domain d6erma1: 6erm A:1-147 [359835]
    Other proteins in same PDB: d6erma2
    automated match to d4u0ea1
    complexed with azt

Details for d6erma1

PDB Entry: 6erm (more details), 2 Å

PDB Description: hiv hexamer with ligand
PDB Compounds: (A:) gag polyprotein

SCOPe Domain Sequences for d6erma1:

Sequence, based on SEQRES records: (download)

>d6erma1 a.73.1.1 (A:1-147) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvhqcisprtlnawvkvveekafspevipmfsalscgatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysp

Sequence, based on observed residues (ATOM records): (download)

>d6erma1 a.73.1.1 (A:1-147) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnqmvhqcisprtlnawvkvveekafspevipmfsalscgatpqdlntmlntvgghq
aamqmlketineeaaewdrlhpvhiapgqmreprgsdiagttstlqeqigwmthnppipv
geiykrwiilglnkivrmysp

SCOPe Domain Coordinates for d6erma1:

Click to download the PDB-style file with coordinates for d6erma1.
(The format of our PDB-style files is described here.)

Timeline for d6erma1:

  • d6erma1 appears in periodic updates to SCOPe 2.07 starting on 2018-11-08

View in 3D
Domains from same chain:
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d6erma2