Lineage for d5ogba_ (5ogb A:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2395396Fold b.60: Lipocalins [50813] (1 superfamily)
    barrel, closed or opened; n=8, S=12; meander
  4. 2395397Superfamily b.60.1: Lipocalins [50814] (10 families) (S)
    bind hydrophobic ligands in their interior
  5. 2395948Family b.60.1.2: Fatty acid binding protein-like [50847] (18 proteins)
    ten-stranded meander beta-sheet folded upon itself
    relates to the common fold by opening the barrel and insertion of beta-hairpin
  6. 2396009Protein Cellular retinoic-acid-binding protein (CRABP) [50861] (2 species)
  7. 2396016Species Human (Homo sapiens), CRABP-II [TaxId:9606] [50862] (55 PDB entries)
  8. 3059287Domain d5ogba_: 5ogb A: [359349]
    automated match to d2fs6b_
    complexed with 9u5

Details for d5ogba_

PDB Entry: 5ogb (more details), 1.8 Å

PDB Description: human cellular retinoic acid binding protein ii (crabpii) with bound synthetic retinoid dc360.
PDB Compounds: (A:) Cellular retinoic acid-binding protein 2

SCOPe Domain Sequences for d5ogba_:

Sequence, based on SEQRES records: (download)

>d5ogba_ b.60.1.2 (A:) Cellular retinoic-acid-binding protein (CRABP) {Human (Homo sapiens), CRABP-II [TaxId: 9606]}
pnfsgnwkiirsenfeellkvlgvnvmlrkiavaaaskpaveikqegdtfyiktsttvrt
teinfkvgeefeeqtvdgrpckslvkwesenkmvceqkllkgegpktswtreltndgeli
ltmtaddvvctrvyvre

Sequence, based on observed residues (ATOM records): (download)

>d5ogba_ b.60.1.2 (A:) Cellular retinoic-acid-binding protein (CRABP) {Human (Homo sapiens), CRABP-II [TaxId: 9606]}
pnfsgnwkiirsenfeellkvlgvnvmlrkiavaaaskpaveikqegdtfyiktsttvrt
teinfkvgeefeeqtvdgrpckslvkwesenkmvceqkllegpktswtreltndgelilt
mtaddvvctrvyvre

SCOPe Domain Coordinates for d5ogba_:

Click to download the PDB-style file with coordinates for d5ogba_.
(The format of our PDB-style files is described here.)

Timeline for d5ogba_:

  • d5ogba_ appears in periodic updates to SCOPe 2.07 starting on 2018-10-25