Lineage for d5yrtg_ (5yrt G:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2840022Superfamily c.1.19: Cobalamin (vitamin B12)-dependent enzymes [51703] (4 families) (S)
  5. 2840071Family c.1.19.3: Diol dehydratase, alpha subunit [51710] (2 proteins)
    automatically mapped to Pfam PF02286
  6. 2840072Protein Diol dehydratase, alpha subunit [51711] (2 species)
  7. 2840073Species Klebsiella oxytoca [TaxId:571] [51712] (10 PDB entries)
  8. 2840084Domain d5yrtg_: 5yrt G: [357932]
    Other proteins in same PDB: d5yrtb1, d5yrtb2, d5yrtc_, d5yrte_, d5yrtf_, d5yrth_, d5yrti_, d5yrtk1, d5yrtk2, d5yrtl_
    automated match to d1egva_
    complexed with 5ad, b12, ca, cl, k

Details for d5yrtg_

PDB Entry: 5yrt (more details), 1.7 Å

PDB Description: diol dehydratase, adocbl/substrate-free, anaerobically-prepared crystal
PDB Compounds: (G:) diol dehydrase alpha subunit

SCOPe Domain Sequences for d5yrtg_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5yrtg_ c.1.19.3 (G:) Diol dehydratase, alpha subunit {Klebsiella oxytoca [TaxId: 571]}
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpneid

SCOPe Domain Coordinates for d5yrtg_:

Click to download the PDB-style file with coordinates for d5yrtg_.
(The format of our PDB-style files is described here.)

Timeline for d5yrtg_: