Lineage for d6mdyb1 (6mdy B:1-274)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2420459Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 2421872Family c.1.10.0: automated matches [191319] (1 protein)
    not a true family
  6. 2421873Protein automated matches [190115] (78 species)
    not a true protein
  7. 3057705Species Legionella pneumophila [TaxId:272624] [357767] (1 PDB entry)
  8. 3057714Domain d6mdyb1: 6mdy B:1-274 [357776]
    Other proteins in same PDB: d6mdya2, d6mdyb2, d6mdyc2, d6mdyd2
    automated match to d4lu0d_

Details for d6mdyb1

PDB Entry: 6mdy (more details), 2.55 Å

PDB Description: crystal structure of a 2-dehydro-3-deoxyphosphooctonate aldolase from legionella pneumophila philadelphia 1
PDB Compounds: (B:) 2-dehydro-3-deoxyphosphooctonate aldolase

SCOPe Domain Sequences for d6mdyb1:

Sequence, based on SEQRES records: (download)

>d6mdyb1 c.1.10.0 (B:1-274) automated matches {Legionella pneumophila [TaxId: 272624]}
mrlcgfeagldkplfliagpcvieseelaletagylkemcsqlnipfiykssfdkanrss
issyrgpgfekglsilekvksqigvpvltdvhedtplfevssvvdvlqtpaflcrqtnfi
qkvaamnkpvnikkgqflapwemkhviakakaqgneqimacergvsfgynnlvsdmrslv
imretgcpvvydathsvqlpggnngvsggqrefipalaraavavgisglfmethpdpdka
lsdgpnswpldkmkqlleslkaadevykkystdf

Sequence, based on observed residues (ATOM records): (download)

>d6mdyb1 c.1.10.0 (B:1-274) automated matches {Legionella pneumophila [TaxId: 272624]}
mrlcgfeagldkplfliagpcvieseelaletagylkemcsqlnipfiykssfgpgfekg
lsilekvksqigvpvltdvhedtplfevssvvdvlqtpaflcrqtnfiqkvaamnkpvni
kkgqflapwemkhviakakaqgneqimacergvsfgynnlvsdmrslvimretgcpvvyd
athsvqqrefipalaraavavgisglfmethpnswpldkmkqlleslkaadevykkystd
f

SCOPe Domain Coordinates for d6mdyb1:

Click to download the PDB-style file with coordinates for d6mdyb1.
(The format of our PDB-style files is described here.)

Timeline for d6mdyb1:

  • d6mdyb1 appears in periodic updates to SCOPe 2.07 starting on 2018-09-20