Lineage for d6g8my_ (6g8m Y:)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2548740Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2548741Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2548925Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 2549037Protein Proteasome alpha subunit (non-catalytic) [56255] (9 species)
    contains an extension to the common fold at the N-terminus
  7. 2549053Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56257] (198 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 3057479Domain d6g8my_: 6g8m Y: [357541]
    Other proteins in same PDB: d6g8ma_, d6g8mb_, d6g8mc_, d6g8md_, d6g8mf_, d6g8mg_, d6g8mh_, d6g8mm_, d6g8mp_, d6g8mq_, d6g8mr_, d6g8mt_, d6g8mu_, d6g8mv_
    automated match to d4g4sl_
    complexed with cl, eqe, mg

Details for d6g8my_

PDB Entry: 6g8m (more details), 2.7 Å

PDB Description: yeast 20s proteasome in complex with cystargolide b derivative 1
PDB Compounds: (Y:) Proteasome subunit beta type-5

SCOPe Domain Sequences for d6g8my_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6g8my_ d.153.1.4 (Y:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
tttlafrfqggiivavdsratagnwvasqtvkkvieinpfllgtmaggaadcqfwetwlg
sqcrlhelrekerisvaaaskilsnlvyqykgaglsmgtmicgytrkegptiyyvdsdgt
rlkgdifcvgsgqtfaygvldsnykwdlsvedalylgkrsilaaahrdaysggsvnlyhv
tedgwiyhgnhdvgelfwkvkeeegsfnnvig

SCOPe Domain Coordinates for d6g8my_:

Click to download the PDB-style file with coordinates for d6g8my_.
(The format of our PDB-style files is described here.)

Timeline for d6g8my_:

  • d6g8my_ appears in periodic updates to SCOPe 2.07 starting on 2018-09-13