SCOPe 2.08: Domain d6axra1: 6axr A:1-147

Lineage for d6axra1 (6axr A:1-147)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
   core: 5 helices; bundle

4. Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)

5. Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)

6. Protein HIV-1 capsid protein [47945] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (70 PDB entries)

8. Domain d6axra1: 6axr A:1-147 [357268]
   Other proteins in same PDB: d6axra2
   automated match to d4xfxa1
   complexed with cl, iod; mutant

Details for d6axra1

PDB Entry: 6axr, 2.3 Å

PDB Description: structure of the p122a mutant of the hiv-1 capsid protein

PDB Compounds: (A:) hiv-1 capsid protein

SCOPe Domain Sequences for d6axra1:

Sequence, based on SEQRES records:

>d6axra1 a.73.1.1 (A:1-147) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
napipvgeiykrwiilglnkivrmysp

Sequence, based on observed residues (ATOM records):

>d6axra1 a.73.1.1 (A:1-147) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaa
mqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmthnapip
vgeiykrwiilglnkivrmysp

Timeline for d6axra1:

• d6axra1 first appeared in SCOPe 2.07