Lineage for d5yhsb1 (5yhs B:1-467)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418840Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2418841Protein automated matches [190075] (97 species)
    not a true protein
  7. 3056808Species Bacillus sp. [TaxId:1409] [356870] (2 PDB entries)
  8. 3056885Domain d5yhsb1: 5yhs B:1-467 [356947]
    Other proteins in same PDB: d5yhsa2, d5yhsb2
    automated match to d5okba_

Details for d5yhsb1

PDB Entry: 5yhs (more details), 2.5 Å

PDB Description: pyruvylated beta-d-galactosidase from bacillus sp. hma207, apo form
PDB Compounds: (B:) Pyruvylated beta-D-galactosidase

SCOPe Domain Sequences for d5yhsb1:

Sequence, based on SEQRES records: (download)

>d5yhsb1 c.1.8.0 (B:1-467) automated matches {Bacillus sp. [TaxId: 1409]}
mkfphdflfgaasasyqvegawnedgkgvtnwdefskipgktyngtngdiavdhyhryke
dvrlmaemglesyrfsiswarilptgdgkvnekgiefynnlideclkygivpfvtlyhwd
lplplekdggwtnkrtaeafvkyaetcfkafgdrvkhwitfnetvmfcglgylkgahppg
iqndvpkyfqathyvfyahaktvavykqlkqygeigithvflpaysvddqkeniqaanha
neyetywyydpilkgeypsyvvqqlkekgwtpnwtveeleiikqnaeendfiglnyyqpi
rverydmdikseehsrenstlapgnpsfdgfyrtvkmddktytkwgweispegfleglhm
lkarygdikmyvtenglgdedpiidgeivdvprikfieahlkvmkraieeginlkgyyaw
svidllswlngykkqygfifvdhndnlkrkkklsfhwykrvvetrge

Sequence, based on observed residues (ATOM records): (download)

>d5yhsb1 c.1.8.0 (B:1-467) automated matches {Bacillus sp. [TaxId: 1409]}
mkfphdflfgaasasyqvegawnedgkgvtnwdefskipgktyngtngdiavdhyhryke
dvrlmaemglesyrfsiswarilptgdgkvnekgiefynnlideclkygivpfvtlyhwd
lplplekdggwtnkrtaeafvkyaetcfkafgdrvkhwitfnetvmfcglgylkgahppg
iqndvpkyfqathyvfyahaktvavykqlkqygeigithvflpaysvddqkeniqaanha
neyetywyydpilkgeypsyvvqqlkekgwtpnwtveeleiikqnaeendfiglnyyqpi
rverydmnpsfdgfyrtvkmddweispegfleglhmlkarygdikmyvtenglgdedpii
dgeivdvprikfieahlkvmkraieeginlkgyyawsvidllswlngykkqygfifvdhn
dnlkrkkklsfhwykrvvetrge

SCOPe Domain Coordinates for d5yhsb1:

Click to download the PDB-style file with coordinates for d5yhsb1.
(The format of our PDB-style files is described here.)

Timeline for d5yhsb1:

  • d5yhsb1 appears in periodic updates to SCOPe 2.07 starting on 2018-08-30

View in 3D
Domains from same chain:
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d5yhsb2