Lineage for d5yifb1 (5yif B:1-467)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418840Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2418841Protein automated matches [190075] (97 species)
    not a true protein
  7. 3056808Species Bacillus sp. [TaxId:1409] [356870] (2 PDB entries)
  8. 3056812Domain d5yifb1: 5yif B:1-467 [356874]
    Other proteins in same PDB: d5yifa2, d5yifb2
    automated match to d5oked_
    complexed with 8vr; mutant

Details for d5yifb1

PDB Entry: 5yif (more details), 2.45 Å

PDB Description: pyruvylated beta-d-galactosidase from bacillus sp. hma207, e163a mutant pyruvylated beta-d-galactose complex
PDB Compounds: (B:) Pyruvylated beta-D-galactosidase

SCOPe Domain Sequences for d5yifb1:

Sequence, based on SEQRES records: (download)

>d5yifb1 c.1.8.0 (B:1-467) automated matches {Bacillus sp. [TaxId: 1409]}
mkfphdflfgaasasyqvegawnedgkgvtnwdefskipgktyngtngdiavdhyhryke
dvrlmaemglesyrfsiswarilptgdgkvnekgiefynnlideclkygivpfvtlyhwd
lplplekdggwtnkrtaeafvkyaetcfkafgdrvkhwitfnatvmfcglgylkgahppg
iqndvpkyfqathyvfyahaktvavykqlkqygeigithvflpaysvddqkeniqaanha
neyetywyydpilkgeypsyvvqqlkekgwtpnwtveeleiikqnaeendfiglnyyqpi
rverydmdikseehsrenstlapgnpsfdgfyrtvkmddktytkwgweispegfleglhm
lkarygdikmyvtenglgdedpiidgeivdvprikfieahlkvmkraieeginlkgyyaw
svidllswlngykkqygfifvdhndnlkrkkklsfhwykrvvetrge

Sequence, based on observed residues (ATOM records): (download)

>d5yifb1 c.1.8.0 (B:1-467) automated matches {Bacillus sp. [TaxId: 1409]}
mkfphdflfgaasasyqvegawnedgkgvtnwdefskipgktyngtngdiavdhyhryke
dvrlmaemglesyrfsiswarilptgdgkvnekgiefynnlideclkygivpfvtlyhwd
lplplekdggwtnkrtaeafvkyaetcfkafgdrvkhwitfnatvmfcglgylkgahppg
iqndvpkyfqathyvfyahaktvavykqlkqygeigithvflpaysvddqkeniqaanha
neyetywyydpilkgeypsyvvqqlkekgwtpnwtveeleiikqnaeendfiglnyyqpi
rverydmdiklapgnpsfdgfyrtvkmddktytkwgweispegfleglhmlkarygdikm
yvtenglgdedpiidgeivdvprikfieahlkvmkraieeginlkgyyawsvidllswln
gykkqygfifvdhndnlkrkkklsfhwykrvvetrge

SCOPe Domain Coordinates for d5yifb1:

Click to download the PDB-style file with coordinates for d5yifb1.
(The format of our PDB-style files is described here.)

Timeline for d5yifb1:

  • d5yifb1 appears in periodic updates to SCOPe 2.07 starting on 2018-08-30

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Domains from same chain:
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d5yifb2