Lineage for d5opda1 (5opd A:11-205)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2446887Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2446888Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2447791Family c.37.1.8: G proteins [52592] (80 proteins)
    core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest
  6. 2448880Protein automated matches [190047] (29 species)
    not a true protein
  7. 2448945Species Escherichia coli [TaxId:331112] [343069] (2 PDB entries)
  8. 3056802Domain d5opda1: 5opd A:11-205 [356864]
    Other proteins in same PDB: d5opda2, d5opda3, d5opdb2, d5opdb3
    automated match to d1d8ta3
    complexed with gol, gtp, iod, mg, na

Details for d5opda1

PDB Entry: 5opd (more details), 2.75 Å

PDB Description: structure of phosphorylated ef-tu in complex with gtp
PDB Compounds: (A:) Elongation factor Tu 1

SCOPe Domain Sequences for d5opda1:

Sequence, based on SEQRES records: (download)

>d5opda1 c.37.1.8 (A:11-205) automated matches {Escherichia coli [TaxId: 331112]}
phvnvgtighvdhgkttltaaittvlaktyggaarafdqidnapeekargitintshvey
dtptrhyahvdcpghadyvknmitgaaqmdgailvvaatdgpmpqtrehillgrqvgvpy
iivflnkcdmvddeellelvemevrellsqydfpgddtpivrgsalkalegdaeweakil
elagfldsyipeper

Sequence, based on observed residues (ATOM records): (download)

>d5opda1 c.37.1.8 (A:11-205) automated matches {Escherichia coli [TaxId: 331112]}
phvnvgtighvdhgkttltaaittvlaktyggarafdqidnapeitintshveydtptrh
yahvdcpghadyvknmitgaaqmdgailvvaatdgpmpqtrehillgrqvgvpyiivfln
kcdmvddeellelvemevrellsqydfpgddtpivrgsalkalegdaeweakilelagfl
dsyipeper

SCOPe Domain Coordinates for d5opda1:

Click to download the PDB-style file with coordinates for d5opda1.
(The format of our PDB-style files is described here.)

Timeline for d5opda1:

  • d5opda1 appears in periodic updates to SCOPe 2.07 starting on 2018-08-30