Lineage for d6dvnc_ (6dvn C:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2453552Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2453553Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2453947Family c.42.1.0: automated matches [191435] (1 protein)
    not a true family
  6. 2453948Protein automated matches [190626] (9 species)
    not a true protein
  7. 2454040Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (29 PDB entries)
  8. 3056755Domain d6dvnc_: 6dvn C: [356817]
    automated match to d5g0ha_
    complexed with edo, hb7, k, zn

Details for d6dvnc_

PDB Entry: 6dvn (more details), 2.2 Å

PDB Description: crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with ddk-137
PDB Compounds: (C:) Hdac6 protein

SCOPe Domain Sequences for d6dvnc_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6dvnc_ c.42.1.0 (C:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
pitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelal
chsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqv
rnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqh
ifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaa
fhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliil
eggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwsslr

SCOPe Domain Coordinates for d6dvnc_:

Click to download the PDB-style file with coordinates for d6dvnc_.
(The format of our PDB-style files is described here.)

Timeline for d6dvnc_:

  • d6dvnc_ appears in periodic updates to SCOPe 2.07 starting on 2018-08-30