SCOPe 2.04: Domain d1tmoa2: 1tmo A:5-631

Lineage for d1tmoa2 (1tmo A:5-631)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein Trimethylamine N-oxide reductase [53713] (1 species)

7. Species Shewanella massilia [TaxId:76854] [53714] (1 PDB entry)

8. Domain d1tmoa2: 1tmo A:5-631 [35327]
   Other proteins in same PDB: d1tmoa1
   complexed with 2md, 2mo

Details for d1tmoa2

PDB Entry: 1tmo, 2.5 Å

PDB Description: trimethylamine n-oxide reductase from shewanella massilia

PDB Compounds: (A:) trimethylamine n-oxide reductase

SCOPe Domain Sequences for d1tmoa2:

Sequence; same for both SEQRES and ATOM records:

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}
nedewlttgshfgafkmkrkngviaevkpfdldkyptdmingirgmvynpsrvrypmvrl
dfllkghksnthqrgdfrfvrvtwdkaltlfkhsldevqtqygpsglhagqtgwratgql
hsstshmqravgmhgnyvkkigdystgagqtilpyvlgstevyaqgtswplilehsdtiv
lwsndpyknlqvgwnaethesfaylaqlkekvkqgkirvisidpvvtktqaylgceqlyv
npqtdvtlmlaiahemiskklyddkfiqgyslgfeefvpyvmgtkdgvaktpewaapicg
veahvirdlaktlvkgrtqfmmgwciqrqqhgeqpywmaavlatmigqiglpgggisygh
hyssigvpssgaaapgafprnldenqkplfdssdfkgasstipvarwidailepgktida
ngskvvypdikmmifsgnnpwnhhqdrnrmkqafhklecvvtvdvnwtatcrfsdivlpa
cttyerndidvygayanrgilamqkmveplfdslsdfeiftrfaavlgkekeytrnmgem
ewletlyneckaanagkfempdfatfwkqgyvhfgdgevwtrhadfrndpeinplgtpsg
lieifsrkidqfgyddckghptwmekt

Timeline for d1tmoa2:

• d1tmoa2 first appeared (with stable ids) in SCOP 1.55, called d1tmo_2
  
• d1tmoa2 appears in SCOPe 2.03
  
• d1tmoa2 appears in SCOPe 2.05
  
• d1tmoa2 appears in the current release, SCOPe 2.08