Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2939535Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. 2939536Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. 2939537Family d.21.1.1: Diaminopimelate epimerase [54507] (2 proteins)
    automatically mapped to Pfam PF01678
  6. 2939586Protein automated matches [352381] (2 species)
    not a true protein

Species:

  1. 2939587Escherichia coli [TaxId:585035] [352382] (2 PDB entries)
    1. Domains for 6d13:
      1. 2939590Domain d6d13a1: 6d13 A:1-130 [352383]
        Other proteins in same PDB: d6d13a3
        automated match to d4ijza1
        protein/RNA complex; complexed with cl, iod
      2. 2939591Domain d6d13a2: 6d13 A:131-274 [352384]
        Other proteins in same PDB: d6d13a3
        automated match to d4ijza2
        protein/RNA complex; complexed with cl, iod
    2. Domains for 6d1q:
      1. 2939588Domain d6d1qa1: 6d1q A:1-130 [352504]
        Other proteins in same PDB: d6d1qa3
        automated match to d4ijza1
        protein/RNA complex; complexed with cl, gol
      2. 2939589Domain d6d1qa2: 6d1q A:131-274 [352505]
        Other proteins in same PDB: d6d1qa3
        automated match to d4ijza2
        protein/RNA complex; complexed with cl, gol
  2. 2939592Escherichia coli [TaxId:83333] [353391] (4 PDB entries)
    1. Domains for 5ygu:
      1. 2939595Domain d5ygua1: 5ygu A:1-130 [353392]
        automated match to d4ijza1
        protein/RNA complex; complexed with iod, tla
      2. 2939596Domain d5ygua2: 5ygu A:131-274 [353393]
        automated match to d4ijza2
        protein/RNA complex; complexed with iod, tla
    2. Domains for 6vck:
      1. 2939599Domain d6vcka1: 6vck A:1-130 [380279]
        Other proteins in same PDB: d6vcka3
        automated match to d4ijza1
        protein/RNA complex; complexed with cl, f, gdp, mg
      2. 2939600Domain d6vcka2: 6vck A:131-274 [380280]
        Other proteins in same PDB: d6vcka3
        automated match to d4ijza2
        protein/RNA complex; complexed with cl, f, gdp, mg
    3. Domains for 6vcl:
      1. 2939593Domain d6vcla1: 6vcl A:1-130 [380246]
        Other proteins in same PDB: d6vcla3
        automated match to d4ijza1
        protein/RNA complex; complexed with 0o2, cl, f, gol, mg
      2. 2939594Domain d6vcla2: 6vcl A:131-274 [380247]
        Other proteins in same PDB: d6vcla3
        automated match to d4ijza2
        protein/RNA complex; complexed with 0o2, cl, f, gol, mg
    4. Domains for 6vcm:
      1. 2939597Domain d6vcma1: 6vcm A:1-130 [380250]
        Other proteins in same PDB: d6vcma3
        automated match to d4ijza1
        protein/RNA complex; complexed with cl, f, gtp, mg
      2. 2939598Domain d6vcma2: 6vcm A:131-274 [380251]
        Other proteins in same PDB: d6vcma3
        automated match to d4ijza2
        protein/RNA complex; complexed with cl, f, gtp, mg

More info for Protein automated matches from d.21.1.1: Diaminopimelate epimerase

Timeline for Protein automated matches from d.21.1.1: Diaminopimelate epimerase: