SCOPe 2.08: Domain d6cd1d_: 6cd1 D:

Lineage for d6cd1d_ (6cd1 D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
   formerly omega-Aminoacid:pyruvate aminotransferase-like

6. Protein automated matches [190152] (25 species)
   not a true protein

7. Species Medicago truncatula [TaxId:3880] [352361] (3 PDB entries)

8. Domain d6cd1d_: 6cd1 D: [352370]
   automated match to d1bj4a_
   complexed with act, edo, gly, plg, pls

Details for d6cd1d_

PDB Entry: 6cd1, 1.91 Å

PDB Description: crystal structure of medicago truncatula serine hydroxymethyltransferase 3 (mtshmt3), complexes with reaction intermediates

PDB Compounds: (D:) serine hydroxymethyltransferase

SCOPe Domain Sequences for d6cd1d_:

Sequence, based on SEQRES records:

>d6cd1d_ c.67.1.4 (D:) automated matches {Medicago truncatula [TaxId: 3880]}
ldyglseadpdvhaiinkekdrqfrsleliasenftskavmeavgscltnkyseglpgkr
yyggnehideleilcqqralaafhldgdkwgvnvqplsgspanfavytailkphdrimgl
dlphgghlshgfmtakrrvsgtsiyfesmpyrldestgvidydmlektaalfrpkliiag
asayprdidyarfrkiadsvgaflmmdmahvsgliaasvladpfefvdivtttthkslrg
prggmiffkkdavhgvdlesainnavfpglqggphnhtigglavclkyaqspdfknyqnq
vvancralanrlveheyklvsggsdnhlvlvdlrpsgidgarvekildmasitlnknsvp
gdksalvpggirigspamttrglgekefeliadlihegvrisleakslvsgtkvqdflnf
vlapefplgdkvsnlrrkvealatqypipgv

Sequence, based on observed residues (ATOM records):

>d6cd1d_ c.67.1.4 (D:) automated matches {Medicago truncatula [TaxId: 3880]}
ldyglseadpdvhaiinkekdrqfrsleliasenftskavmeavgscltnkyseglpgkr
yyggnehideleilcqqralaafhldgdkwgvnvqplsgspanfavytailkphdrimgl
dlphgghlshgfmtakrrvsgtsiyfesmpyrldestgvidydmlektaalfrpkliiag
asayprdidyarfrkiadsvgaflmmdmahvsgliaasvladpfefvdivtttthkslrg
prggmiffkkdavhgvdlesainnavfpglqggphnhtigglavclkyaqspdfknyqnq
vvancralanrlveheyklvsggsdnhlvlvdlrpsgidgarvekildmasitlnknsvp
gdksalvpggirigspamttrglgekefeliadlihegvrisleakslvsvqdflnfvlf
plgdkvsnlrrkvealatqypipgv

Timeline for d6cd1d_:

• d6cd1d_ first appeared in SCOPe 2.07