Lineage for d5ok4a1 (5ok4 A:1-244)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2426096Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2426097Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2430344Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2430345Protein automated matches [190069] (246 species)
    not a true protein
  7. 2431666Species Methanothermobacter marburgensis [TaxId:79929] [235006] (3 PDB entries)
  8. 3052122Domain d5ok4a1: 5ok4 A:1-244 [352184]
    Other proteins in same PDB: d5ok4a2
    automated match to d4jjfa1
    complexed with fe, feg, gol

Details for d5ok4a1

PDB Entry: 5ok4 (more details), 1.29 Å

PDB Description: crystal structure of native [fe]-hydrogenase hmd from methanothermobacter marburgensis inactivated by o2.
PDB Compounds: (A:) 5,10-methenyltetrahydromethanopterin hydrogenase

SCOPe Domain Sequences for d5ok4a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5ok4a1 c.2.1.0 (A:1-244) automated matches {Methanothermobacter marburgensis [TaxId: 79929]}
mklailgagcyrthaasgitnfsracevaemvgkpeiamthstitmgaelkelagvdevv
vadpvfdnqftviddfayedvieahkedpekimpqirekvnevakelpkppegaihfthp
edlgfeittddreavadadfimtwfpkgdmqpdiinkfiddikpgaivthactipttkfy
kifeqkhgdlvtkpetlnvtsyhpgavpemkgqvyiaegyasedaietlfelgqkargna
yrlp

SCOPe Domain Coordinates for d5ok4a1:

Click to download the PDB-style file with coordinates for d5ok4a1.
(The format of our PDB-style files is described here.)

Timeline for d5ok4a1:

  • d5ok4a1 appears in periodic updates to SCOPe 2.07 starting on 2018-05-17

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Domains from same chain:
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d5ok4a2