Lineage for d5vm4j1 (5vm4 J:5-129)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2344610Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2347168Protein automated matches [190119] (20 species)
    not a true protein
  7. 2347651Species Llama (Lama glama) [TaxId:9844] [187485] (155 PDB entries)
  8. 3051743Domain d5vm4j1: 5vm4 J:5-129 [351805]
    Other proteins in same PDB: d5vm4a2, d5vm4b2, d5vm4c2, d5vm4d2, d5vm4e2, d5vm4f2, d5vm4g2, d5vm4h2, d5vm4i2, d5vm4j2, d5vm4k2, d5vm4l2
    automated match to d4w81a_
    complexed with act, fmt

Details for d5vm4j1

PDB Entry: 5vm4 (more details), 1.9 Å

PDB Description: the apo form of the triclocarban-binding single domain camelid nanobody vhh t10
PDB Compounds: (J:) single domain camelid nanobody VHH T10

SCOPe Domain Sequences for d5vm4j1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vm4j1 b.1.1.1 (J:5-129) automated matches {Llama (Lama glama) [TaxId: 9844]}
klqqsgggmvqtgdslrlscvgsrralsstivgwfrqipgkerefvggiawsssdtwyad
svkgrftiskddaangvhlqmsslkpedtavyycasalrrpgsdasdytripdypywgqg
tqvtv

SCOPe Domain Coordinates for d5vm4j1:

Click to download the PDB-style file with coordinates for d5vm4j1.
(The format of our PDB-style files is described here.)

Timeline for d5vm4j1:

  • d5vm4j1 appears in periodic updates to SCOPe 2.07 starting on 2018-05-03