Lineage for d5xrya1 (5xry A:3-334)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2445862Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2445863Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2446486Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2446487Protein automated matches [227126] (21 species)
    not a true protein
  7. 2446806Species Scheffersomyces stipitis [TaxId:322104] [328848] (23 PDB entries)
  8. 3051466Domain d5xrya1: 5xry A:3-334 [351528]
    Other proteins in same PDB: d5xrya3
    automated match to d1ay0a1
    complexed with ca, peg

Details for d5xrya1

PDB Entry: 5xry (more details), 1.3 Å

PDB Description: crystal structure of transketolase contains cysteinesufonic acid from pichia stipitis
PDB Compounds: (A:) transketolase

SCOPe Domain Sequences for d5xrya1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5xrya1 c.36.1.0 (A:3-334) automated matches {Scheffersomyces stipitis [TaxId: 322104]}
svdqkaistirllavdavaaansghpgaplglapaahavfkkmrfnpkdtkwinrdrfvl
snghacallysmlvlygydltvedlkkfrqlgsktpghpentdvpgaevttgplgqgicn
gvgialaqaqfaatynkpdfpisdsytyvflgdgclmegvsseasslaghlqlgnliafw
ddnkisidgstevaftedviaryksygwhivevsdadtditaiaaaideakkvtnkptlv
rltttigfgslaqgthgvhgaplkaddikqlktkwgfnpeesfavpaevtasynehvaen
qkiqqqwnelfaaykqkypelgaelqrrldgk

SCOPe Domain Coordinates for d5xrya1:

Click to download the PDB-style file with coordinates for d5xrya1.
(The format of our PDB-style files is described here.)

Timeline for d5xrya1:

  • d5xrya1 appears in periodic updates to SCOPe 2.07 starting on 2018-04-26