SCOPe 2.08: Domain d5ud2b_: 5ud2 B:

Lineage for d5ud2b_ (5ud2 B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.0: automated matches [191319] (1 protein)
   not a true family

6. Protein automated matches [190115] (94 species)
   not a true protein

7. Species Helicobacter pylori [TaxId:85962] [312431] (15 PDB entries)

8. Domain d5ud2b_: 5ud2 B: [350910]
   automated match to d3c4ua_
   complexed with 13p, na, zn

Details for d5ud2b_

PDB Entry: 5ud2, 1.78 Å

PDB Description: class ii fructose-1,6-bisphosphate aldolase h180q variant of helicobacter pylori with dhap

PDB Compounds: (B:) Fructose-bisphosphate aldolase

SCOPe Domain Sequences for d5ud2b_:

Sequence, based on SEQRES records:

>d5ud2b_ c.1.10.0 (B:) automated matches {Helicobacter pylori [TaxId: 85962]}
mlvkgneillkahkegygvgafnfvnfemlnaifeagneensplfiqasegaikymgidm
avgmvkimceryphipvalhldhgttfescekavkagftsvmidashhafeenleltskv
vkmahnagvsveaelgrlmgiednisvdekdavlvnpkeaeqfvkesqvdylapaigtsq
gafkfkgepkldferlqevkrltniplvlhgasaipdnvrksyldaggdlkgskgvpfef
lqesvkgginkvntdtdlriafiaevrkvanedksqfdlrkffspaqlalknvvkermkl
lgsanki

Sequence, based on observed residues (ATOM records):

>d5ud2b_ c.1.10.0 (B:) automated matches {Helicobacter pylori [TaxId: 85962]}
mlvkgneillkahkegygvgafnfvnfemlnaifeagneensplfiqasegaikymgidm
avgmvkimceryphipvalhldhgttfescekavkagftsvmidashhafeenleltskv
vkmahnagvsveaelgrvlvnpkeaeqfvkesqvdylapaigtsqgafkfkgepkldfer
lqevkrltniplvlhgasaipdnvrksyldaggdlkgskgvpfeflqesvkgginkvntd
tdlriafiaevrkvanedksqfdlrkffspaqlalknvvkermkllgsanki

Timeline for d5ud2b_:

• d5ud2b_ first appeared in SCOPe 2.07