Lineage for d5ydra1 (5ydr A:1-73)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2501111Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2501112Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 2501389Protein Ubiquitin [54238] (9 species)
  7. 2501491Species Human (Homo sapiens) [TaxId:9606] [54239] (296 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 3048851Domain d5ydra1: 5ydr A:1-73 [348913]
    Other proteins in same PDB: d5ydra2, d5ydrd2
    automated match to d5toga_
    protein/DNA complex; complexed with po4, zn

Details for d5ydra1

PDB Entry: 5ydr (more details), 2 Å

PDB Description: structure of dnmt1 rfts domain in complex with ubiquitin
PDB Compounds: (A:) Polyubiquitin-B

SCOPe Domain Sequences for d5ydra1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5ydra1 d.15.1.1 (A:1-73) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

SCOPe Domain Coordinates for d5ydra1:

Click to download the PDB-style file with coordinates for d5ydra1.
(The format of our PDB-style files is described here.)

Timeline for d5ydra1:

  • d5ydra1 is new in SCOPe 2.07-stable

View in 3D
Domains from same chain:
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d5ydra2