Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2489936Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2490288Superfamily c.97.3: JAB1/MPN domain [102712] (2 families) (S)
  5. 2490289Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
    Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)
  6. 2490321Protein Proteasome regulatory subunit Rpn8 [346089] (1 species)
  7. 2490322Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346339] (9 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

  1. Domain(s) for 4cr2:
  2. Domain(s) for 4o8x:
  3. Domain(s) for 4o8y:
  4. Domain(s) for 4ocl:
    1. 2490328Domain d4ocla_: 4ocl A: [263271]
      Other proteins in same PDB: d4oclb_, d4oclc_, d4ocle_, d4oclf_
      automated match to d2o95a_
      complexed with zn
    2. 2490329Domain d4ocld_: 4ocl D: [263272]
      Other proteins in same PDB: d4oclb_, d4oclc_, d4ocle_, d4oclf_
      automated match to d2o95a_
      complexed with zn
  5. Domain(s) for 4ocm:
    1. 2490326Domain d4ocma_: 4ocm A: [263273]
      Other proteins in same PDB: d4ocmb_, d4ocmc_, d4ocme_, d4ocmf_
      automated match to d2o95a_
      complexed with k, zn
    2. 2490327Domain d4ocmd_: 4ocm D: [263274]
      Other proteins in same PDB: d4ocmb_, d4ocmc_, d4ocme_, d4ocmf_
      automated match to d2o95a_
      complexed with k, zn
  6. Domain(s) for 4ocn:
    1. 2490330Domain d4ocna_: 4ocn A: [263275]
      Other proteins in same PDB: d4ocnb_, d4ocnc_, d4ocne_, d4ocnf_
      automated match to d2o95a_
    2. 2490331Domain d4ocnd_: 4ocn D: [263276]
      Other proteins in same PDB: d4ocnb_, d4ocnc_, d4ocne_, d4ocnf_
      automated match to d2o95a_
  7. Domain(s) for 4owp:
  8. Domain(s) for 5u4p:
  9. Domain(s) for 5w83:

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.97.3.1 Proteasome regulatory subunit Rpn8

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.97.3.1 Proteasome regulatory subunit Rpn8:

  • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.97.3.1 Proteasome regulatory subunit Rpn8 is new in SCOPe 2.07-stable