SCOPe 2.07: Protein: Proteasome regulatory subunit Rpn8

Lineage for Protein: Proteasome regulatory subunit Rpn8

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
Superfamily c.97.3: JAB1/MPN domain [102712] (2 families)
Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)
Protein Proteasome regulatory subunit Rpn8 [346089] (1 species)

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346339] (9 PDB entries)

Domain for 4cr2:

Domain d4cr2u1: 4cr2 U:5-176 [345199]
Other proteins in same PDB: d4cr21_, d4cr22_, d4cr23_, d4cr24_, d4cr25_, d4cr26_, d4cr27_, d4cr2a_, d4cr2b_, d4cr2c_, d4cr2d_, d4cr2e_, d4cr2f_, d4cr2g_, d4cr2h1, d4cr2h2, d4cr2h3, d4cr2i1, d4cr2i2, d4cr2i3, d4cr2j1, d4cr2j2, d4cr2j3, d4cr2k1, d4cr2k2, d4cr2k3, d4cr2l1, d4cr2l2, d4cr2l3, d4cr2m1, d4cr2m2, d4cr2m3, d4cr2n1, d4cr2n2, d4cr2n3, d4cr2o1, d4cr2o2, d4cr2p1, d4cr2p2, d4cr2q1, d4cr2q2, d4cr2r1, d4cr2r2, d4cr2s1, d4cr2s2, d4cr2t1, d4cr2t2, d4cr2u2, d4cr2v1, d4cr2v2, d4cr2w_, d4cr2x_, d4cr2y_, d4cr2z1, d4cr2z2, d4cr2z3

Domain for 4o8x:
- Domain d4o8xa1: 4o8x A:2-178 [267010]
  Other proteins in same PDB: d4o8xa2, d4o8xb_
  automated match to d2o95a_
  complexed with edo, zn
Domain for 4o8y:
- Domain d4o8ya1: 4o8y A:2-178 [267011]
  Other proteins in same PDB: d4o8ya2, d4o8yb_
  automated match to d2o95a_
  complexed with edo
Domains for 4ocl:
1. Domain d4ocla_: 4ocl A: [263271]
  Other proteins in same PDB: d4oclb_, d4oclc_, d4ocle_, d4oclf_
  automated match to d2o95a_
  complexed with zn
2. Domain d4ocld_: 4ocl D: [263272]
  Other proteins in same PDB: d4oclb_, d4oclc_, d4ocle_, d4oclf_
  automated match to d2o95a_
  complexed with zn
Domains for 4ocm:
1. Domain d4ocma_: 4ocm A: [263273]
  Other proteins in same PDB: d4ocmb_, d4ocmc_, d4ocme_, d4ocmf_
  automated match to d2o95a_
  complexed with k, zn
2. Domain d4ocmd_: 4ocm D: [263274]
  Other proteins in same PDB: d4ocmb_, d4ocmc_, d4ocme_, d4ocmf_
  automated match to d2o95a_
  complexed with k, zn
Domains for 4ocn:
1. Domain d4ocna_: 4ocn A: [263275]
  Other proteins in same PDB: d4ocnb_, d4ocnc_, d4ocne_, d4ocnf_
  automated match to d2o95a_
2. Domain d4ocnd_: 4ocn D: [263276]
  Other proteins in same PDB: d4ocnb_, d4ocnc_, d4ocne_, d4ocnf_
  automated match to d2o95a_
Domain for 4owp:
- Domain d4owpa_: 4owp A: [275625]
  Other proteins in same PDB: d4owpb_
  automated match to d2o95a_
  complexed with zn
Domain for 5u4p:
- Domain d5u4pa_: 5u4p A: [338696]
  Other proteins in same PDB: d5u4pb_, d5u4pc_
  automated match to d2o95a_
  complexed with zn
Domain for 5w83:
- Domain d5w83a_: 5w83 A: [338791]
  Other proteins in same PDB: d5w83b_
  automated match to d2o95a_
  complexed with zn

More info for Protein Proteasome regulatory subunit Rpn8 from c.97.3.1: JAB1/MPN domain

Timeline for Protein Proteasome regulatory subunit Rpn8 from c.97.3.1: JAB1/MPN domain:

Protein Proteasome regulatory subunit Rpn8 from c.97.3.1: JAB1/MPN domain is new in SCOPe 2.07-stable