SCOPe 2.08: Domain d5kc8a_: 5kc8 A:

Lineage for d5kc8a_ (5kc8 A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [189363] (15 PDB entries)

8. Domain d5kc8a_: 5kc8 A: [345761]
   automated match to d5kc9a_
   complexed with ca, edo

Details for d5kc8a_

PDB Entry: 5kc8, 1.75 Å

PDB Description: crystal structure of the amino-terminal domain (atd) of iglur delta-2 (glud2)

PDB Compounds: (A:) Glutamate receptor ionotropic, delta-2

SCOPe Domain Sequences for d5kc8a_:

Sequence, based on SEQRES records:

>d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dsiihigaifdesakkddevfrtavgdlnqneeilqtekitfsvtfvdgnnpfqavqeac
elmnqgilalvssigctsagslqsladamhiphlfiqrstagtprsgcgltrsnrnddyt
lsvrppvylhdvilrvvteyawqkfiifydseydirgiqefldkvsqqgmdvalqkvenn
inkmittlfdtmrieelnryrdtlrrailvmnpataksfitevvetnlvafdchwiiine
eindvdvqelvrrsigrltiirqtfpvpqnisqrcfrgnhrisstlcdpkdpfaqnmeis
nlyiydtvlllanafhkkledrkwhsmaslscirknskpwqggrsmletikkggvsgltg
elefgenggnpnvhfeilgtnygeelgrgvrklgcwnpvtglngsl

Sequence, based on observed residues (ATOM records):

>d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dsiihigaifdesakkddevfrtavgdlnqneeilqtekitfsvtfvdgnnpfqavqeac
elmnqgilalvssigctsagslqsladamhiphlfiqrstagtprsgcgltrsnrnddyt
lsvrppvylhdvilrvvteyawqkfiifydseydirgiqefldkvsqqgmdvalqkvenn
inkmittlfdtmrieelnryrdtlrrailvmnpataksfitevvetnlvafdchwiiine
eindvdvqelvrrsigrltiirqtfpvpqnisqrcfrgnhrisstlcdpkdpfaqnmeis
nlyiydtvlllanafhkkledrkwhsmaslscirknskpwqggrsmletikkggvsgltg
elefgenggnpnvhfeilgtgvrklgcwnpvtglngsl

Timeline for d5kc8a_:

• d5kc8a_ first appeared in SCOPe 2.07