Lineage for d5gmki_ (5gmk I:)

  1. Root: SCOPe 2.08
  2. 3045664Class j: Peptides [58231] (151 folds)
  3. 3047712Fold j.141: Pre-mRNA splicing factor Syf2-like [345905] (1 superfamily)
    Extended mostly helical fragments
  4. 3047713Superfamily j.141.1: Pre-mRNA splicing factor Syf2-like [345941] (1 family) (S)
    Pfam PF08231
  5. 3047714Family j.141.1.1: Pre-mRNA splicing factor Syf2-like [345999] (1 protein)
  6. 3047715Protein Pre-mRNA splicing factor Syf2 [346142] (1 species)
  7. 3047716Species Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292] [346459] (1 PDB entry)
  8. 3047717Domain d5gmki_: 5gmk I: [345644]
    Other proteins in same PDB: d5gmka_, d5gmkb_, d5gmkd_, d5gmkf_, d5gmkg_, d5gmkh_, d5gmkn1, d5gmkn2, d5gmkv_
    protein/RNA complex; complexed with gtp, mg, zn

Details for d5gmki_

PDB Entry: 5gmk (more details), 3.4 Å

PDB Description: cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution
PDB Compounds: (I:) Pre-mRNA-splicing factor SYF2

SCOPe Domain Sequences for d5gmki_:

Sequence, based on SEQRES records: (download)

>d5gmki_ j.141.1.1 (I:) Pre-mRNA splicing factor Syf2 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
rggisydqlaklsyektlrnlatqtqnsskqdssadeednknvpkkgrigkvqkdtktgk
itiadddklvnklavslqseskkryearkrqmqnaktlygvesfindknkqfneklsres

Sequence, based on observed residues (ATOM records): (download)

>d5gmki_ j.141.1.1 (I:) Pre-mRNA splicing factor Syf2 {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}
rggisydqlaklsyektlrnlatqtqnsskqdkvqkdtktgkitiadddklvnklavslq
seskkryearkrqmqnaktlygvesfindknkqfneklsres

SCOPe Domain Coordinates for d5gmki_:

Click to download the PDB-style file with coordinates for d5gmki_.
(The format of our PDB-style files is described here.)

Timeline for d5gmki_: