![]() | Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds) |
![]() | Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
![]() | Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) ![]() "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
![]() | Family e.8.1.8: Splicing factor Prp8 RT domain [345981] (2 protein domains) Pfam PF10598, Pfam PF10597. Includes linker domain discussed in PubMed 23354046 Homology to retroviral RT domains discussed in PubMed 21441348 |
![]() | Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [346115] (2 species) |
![]() | Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [346406] (1 PDB entry) |
![]() | Domain d4i43b4: 4i43 B:885-1652 [345297] Other proteins in same PDB: d4i43a1, d4i43a2, d4i43b1, d4i43b2, d4i43b3, d4i43b5 protein/RNA complex |
PDB Entry: 4i43 (more details), 2 Å
SCOPe Domain Sequences for d4i43b4:
Sequence, based on SEQRES records: (download)
>d4i43b4 e.8.1.8 (B:885-1652) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]} vmvewlesrsfspipfppltykndtkilvlaledlkdvyaskvrlnasereelalieeay dnphdtlnrikkylltqrvfkpvditmmenyqnispvysvdplekitdayldqylwyead qrklfpnwikpsdseippllvykwtqginnlseiwdvsrgqsavllettlgemaekidft llnrllrlivdpniadyitaknnvvinfkdmshvnkyglirglkfasfifqyyglvidll llgqeratdlagpannpnefmqfkskevekahpirlytryldriymlfhfeedegeeltd eylaenpdpnfensigynnrkcwpkdsrmrlirqdvnlgravfweiqsrvptsltsikwe nafvsvysknnpnllfsmcgfevrilprqrmeevvsndegvwdlvdertkqrtakaylkv seeeikkfdsrirgilmasgsttftkvaakwntslislftyfreaivateplldilvkge triqnrvklglnskmptrfppavfytpkelgglgmisashilipasdlswskqtdtgith fragmthedekliptifryittwenefldsqrvwaeyatkrqeaiqqnrrlafeelegsw drgipristlfqrdrhtlaydrghrirrefkqyslernspfwwtnshhdgklwnlnayrt dviqalggietilehtlfkgtgfnsweglfwekasgfedsmqfkklthaqrtglsqipnr rftlwwsptinranvyvgflvqldltgiflhgkiptlkisliqifrah
>d4i43b4 e.8.1.8 (B:885-1652) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]} vmvewlesrsfspipfppltykndtkilvlaledlkdvyaskvrlnasereelalieeay dnphdtlnrikkylltqrvfkpvditpvysvdplekitdayldqylwyeadqrklfpnwi kpsdseippllvykwtqginnlseiwdvsrgqsavllettlgemaekidftllnrllrli vdpniadyitaknnvvinfkdmshvnkyglirglkfasfifqyyglvidllllgqeratd lagpannpnefmqfkskevekahpirlytryldriymlfhfeedegeeltdeylaenpdp nfensigynnrkcwpkdsrmrlirqdvnlgravfweiqsrvptsltsikwenafvsvysk nnpnllfsmcgfevrilprqrmeendegvwdlvdertkqrtakaylkvseeeikkfdsri rgilmasttftkvaakwntslislftyfreaivateplldilvkgetriqnrvklglnsk mptrfppavfytpkelgglgmisashilipasdlswskqtdtgithfragmthedeklip tifryittwenefldsqrvwaeyatkrqeaiqqnrrlafeelegswdrgipristlfqrd rhtlaydrghrirrefkqyslernspfwwtnshhdgklwnlnayrtdviqalggietile htlfkgtgfnsweglfwlsqipnrrftlwwsptinranvyvgflvqldltgiflhgkipt lkisliqifrah
Timeline for d4i43b4:
![]() Domains from same chain: (mouse over for more information) d4i43b1, d4i43b2, d4i43b3, d4i43b5 |