SCOPe 2.08: Domain d3zefb3: 3zef B:1840-2091

Lineage for d3zefb3 (3zef B:1840-2091)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.0: automated matches [191357] (1 protein)
   not a true family

6. Protein automated matches [190396] (40 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346315] (1 PDB entry)

8. Domain d3zefb3: 3zef B:1840-2091 [345047]
   Other proteins in same PDB: d3zefa1, d3zefa2, d3zefb1, d3zefb2, d3zefb4, d3zefb5, d3zefd1, d3zefd2
   automated match to d4i43b2
   protein/RNA complex

Details for d3zefb3

PDB Entry: 3zef, 3.1 Å

PDB Description: Crystal structure of Prp8:Aar2 complex: second crystal form at 3.1 A resolution

PDB Compounds: (B:) Pre-mRNA-splicing factor 8

SCOPe Domain Sequences for d3zefb3:

Sequence, based on SEQRES records:

>d3zefb3 c.55.3.0 (B:1840-2091) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
yaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiihtsvw
agqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpniairpt
enrlpfsaamsidklsdvvmkatepqmvlfniyddwldrlssytafsrltlllralktne
esakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynvnisaltqtei
kdiilgqnikap

Sequence, based on observed residues (ATOM records):

>d3zefb3 c.55.3.0 (B:1840-2091) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
yaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiihtsvw
rlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpniairptenrl
pfsaamsidklsdvvmkatepqmvlfniyddwldrlssytafsrltlllralktneesak
millsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynvnisaltqteikdii
lgqnikap

Timeline for d3zefb3:

• d3zefb3 first appeared in SCOPe 2.07