SCOPe 2.08: Domain d5x2oa_: 5x2o A:

Lineage for d5x2oa_ (5x2o A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Oryzias latipes [TaxId:8090] [334713] (5 PDB entries)

8. Domain d5x2oa_: 5x2o A: [344442]
   Other proteins in same PDB: d5x2oh_, d5x2oj_, d5x2ok1, d5x2ok2, d5x2ol1, d5x2ol2
   automated match to d5x2nb_
   complexed with arg, ca, cl, na, nag

Details for d5x2oa_

PDB Entry: 5x2o, 2.6 Å

PDB Description: crystal structure of the medaka fish taste receptor t1r2a-t1r3 ligand binding domains in complex with l-arginine

PDB Compounds: (A:) Taste receptor, type 1, member 2a

SCOPe Domain Sequences for d5x2oa_:

Sequence, based on SEQRES records:

>d5x2oa_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}
tsefhlrgdyligglfnihyvaaanfqrpqaidcssklfilpnyrrfqmmrfsveeinns
ssllpnvslgyqmfdhcsdihsfpgifkllsvndlirpwedastglpnaigvvgpftsth
alsiapifmtnlfpmvsygcsgsvfskenlypsflrtvhsnkdvinaivgiilnfnwrwv
aflysdddfgkdgleqfknkiedseiclafykainvntdylqvfkqieeqnikvivvfap
kvyaeavvesavqlnvtnkvwiaddgwslnkklpsmngiqnigtvlgvaqpvvtipgftd
fiysaisqtdggdteqkmfcnqkcncsnlsvksllnadpsfsfpvyaavyaiahalhntl
rcgsdrcpknitvhphmileelkksnftllnqtvqfdengdpkfgslsvvfwnssgnaee
vgsyhfqssihlsinktkikwf

Sequence, based on observed residues (ATOM records):

>d5x2oa_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}
tsefhlrgdyligglfnihyvaaanfqrpqaidcssklfilpnyrrfqmmrfsveeinns
ssllpnvslgyqmfdhcsdihsfpgifkllsvndlirpwelpnaigvvgpftsthalsia
pifmtnlfpmvsygcsgsvfskenlypsflrtvhsnkdvinaivgiilnfnwrwvaflys
dddfgkdgleqfknkiedseiclafykainvntdylqvfkqieeqnikvivvfapkvyae
avvesavqlnvtnkvwiaddgwslnkklpsmngiqnigtvlgvaqpvvtipgftdfiysa
ismfcnqkcncsnlsvksllnadpsfsfpvyaavyaiahalhntlrcgsdrcptvhphmi
leelkksnftllnqtvqfdengdpkfgslsvvfwnssgnaeevgsyhfqslsinktkikw
f

Timeline for d5x2oa_:

• d5x2oa_ first appeared in SCOPe 2.07