SCOPe 2.08: Domain d5u4pb_: 5u4p B:

Lineage for d5u4pb_ (5u4p B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
   core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest

4. Superfamily c.97.3: JAB1/MPN domain [102712] (2 families)

5. Family c.97.3.1: JAB1/MPN domain [102713] (8 proteins)
   Pfam PF01398; Pfam PF14464; synonyms Mov34, PAD-1. PubMed 17559875 asserts homology to (c.97.1)

6. Protein Proteasome regulatory subunit Rpn11 [346088] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346338] (5 PDB entries)

8. Domain d5u4pb_: 5u4p B: [344413]
   Other proteins in same PDB: d5u4pa_, d5u4pc_
   automated match to d5w83b_
   complexed with zn

Details for d5u4pb_

PDB Entry: 5u4p, 2.5 Å

PDB Description: protein-protein complex between 26s proteasome regulatory subunit rpn8, rpn11, and ubiquitin s31

PDB Compounds: (B:) 26s proteasome regulatory subunit rpn11

SCOPe Domain Sequences for d5u4pb_:

Sequence, based on SEQRES records:

>d5u4pb_ c.97.3.1 (B:) Proteasome regulatory subunit Rpn11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgtgvsveav
ddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvdp
iqsvkgkvvidafrlidtgalinnleprqttsntgllnkaniqalihglnrhyyslnidy
hktaketkmlmnlh

Sequence, based on observed residues (ATOM records):

>d5u4pb_ c.97.3.1 (B:) Proteasome regulatory subunit Rpn11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgtgvsveav
ddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvdp
iqsvkgkvvidafrlirhyyslnidyhtaketkmlmnlh

Timeline for d5u4pb_:

• d5u4pb_ first appeared in SCOPe 2.07