Lineage for d5xhgb1 (5xhg B:1-120)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2300045Species Escherichia coli [TaxId:316407] [343346] (1 PDB entry)
  8. 2300061Domain d5xhgb1: 5xhg B:1-120 [343362]
    Other proteins in same PDB: d5xhga1, d5xhga2, d5xhgb2, d5xhgc1, d5xhgc2, d5xhgd2
    automated match to d1n8zb1
    complexed with edo, oaz, peg, so4

Details for d5xhgb1

PDB Entry: 5xhg (more details), 1.76 Å

PDB Description: crystal structure of trastuzumab fab fragment bearing ne-(o- azidobenzyloxycarbonyl)-l-lysine
PDB Compounds: (B:) polypeptide(H)

SCOPe Domain Sequences for d5xhgb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5xhgb1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Escherichia coli [TaxId: 316407]}
evqlvesggglvqpggslrlscaasgfnikdtyihwvrqapgkglewvariyptngytry
adsvkgrftisadtskntaylqmnslraedtavyycsrwggdgfyamdywgqgtlvtvss

SCOPe Domain Coordinates for d5xhgb1:

Click to download the PDB-style file with coordinates for d5xhgb1.
(The format of our PDB-style files is described here.)

Timeline for d5xhgb1:

  • d5xhgb1 appears in periodic updates to SCOPe 2.06 starting on 2017-12-21