SCOPe 2.06: Domain d5ybwb_: 5ybw B:

Lineage for d5ybwb_ (5ybw B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
   consists of two similar domains related by pseudo dyad; duplication
   core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214

4. Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families)

5. Family c.79.1.0: automated matches [191338] (1 protein)
   not a true family

6. Protein automated matches [190215] (33 species)
   not a true protein

7. Species Scapharca broughtonii [TaxId:148819] [343306] (1 PDB entry)

8. Domain d5ybwb_: 5ybw B: [343307]
   automated match to d3l6cb_

Details for d5ybwb_

PDB Entry: 5ybw, 1.9 Å

PDB Description: crystal structure of pyridoxal 5'-phosphate-dependent aspartate racemase

PDB Compounds: (B:) aspartate racemase

SCOPe Domain Sequences for d5ybwb_:

Sequence, based on SEQRES records:

>d5ybwb_ c.79.1.0 (B:) automated matches {Scapharca broughtonii [TaxId: 148819]}
ipqfevtvtdikkaydriskhilytpvftsptfdrmvgskagrqfyfkaenlqktgsfka
rgalnailcalerepslagvvthssgnhgqalawaskragvkccvvvpktapqvkfdame
nygaevvkcepnptsrketceglaksrgykyisssddydviagqgtialellqqqpdlda
ilvsvsaggmasgicvytkntksdlkvflvepegkmleeciskrerlwpnppqfldtiad
giilqqcgnktwpiilelpekevitvnndniveamrfvfarmklvieaaagatvaaamte
rfqnfhpeakkvgiilcggnvdieklpwt

Sequence, based on observed residues (ATOM records):

>d5ybwb_ c.79.1.0 (B:) automated matches {Scapharca broughtonii [TaxId: 148819]}
ipqfevtvtdikkaydriskhilytpvftsptfdrmvgskagrqfyfkaenlqktgsfka
rgalnailcalerepslagvvthssgnhgqalawaskragvkccvvvpktapqvkfdame
nygaevvkcetsrketceglksrgykyisssddydviagqgtialellqqqpdldailvs
vsaggmasgicvytkntksdlkvflvepegkmleeciskrerlwpnppqfldtiadgiil
qqcgnktwpiilelpekevitvnndniveamrfvfarmklvieaaagatvaaamterfqn
fhpeakkvgiilcggnvdieklpwt

Timeline for d5ybwb_:

• d5ybwb_ is new in SCOPe 2.06-stable
  
• d5ybwb_ appears in SCOPe 2.07
  
• d5ybwb_ appears in the current release, SCOPe 2.08