Lineage for Species: Pseudomonas aeruginosa [TaxId: 208963]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150174Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2150175Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2150238Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 protein domains)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2150251Protein automated matches [196235] (2 species)
    not a true protein
  7. 2299975Species Pseudomonas aeruginosa [TaxId:208963] [343276] (2 PDB entries)

PDB entries in Species: Pseudomonas aeruginosa [TaxId: 208963]:

  1. Domain(s) for 5wyq:
    1. 2300049Domain d5wyqa1: 5wyq A:5-250 [343350]
      Other proteins in same PDB: d5wyqa2, d5wyqb2
      automated match to d1p9pa_
      complexed with sam
    2. 2300063Domain d5wyqb1: 5wyq B:5-250 [343364]
      Other proteins in same PDB: d5wyqa2, d5wyqb2
      automated match to d1p9pa_
      complexed with sam
  2. Domain(s) for 5wyr:
    1. 2299976Domain d5wyra1: 5wyr A:5-250 [343277]
      Other proteins in same PDB: d5wyra2, d5wyrb2
      automated match to d1p9pa_
      complexed with sfg
    2. 2300043Domain d5wyrb1: 5wyr B:5-250 [343344]
      Other proteins in same PDB: d5wyra2, d5wyrb2
      automated match to d1p9pa_
      complexed with sfg

More info for Species Pseudomonas aeruginosa [TaxId:208963] from c.116.1.4 automated matches

Timeline for Species Pseudomonas aeruginosa [TaxId:208963] from c.116.1.4 automated matches:

  • Species Pseudomonas aeruginosa [TaxId:208963] from c.116.1.4 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-12-21