Lineage for d5m4za_ (5m4z A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2190102Fold d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
    contains large mixed beta-sheet
  4. 2190103Superfamily d.117.1: Thymidylate synthase/dCMP hydroxymethylase [55831] (2 families) (S)
    automatically mapped to Pfam PF00303
  5. 2190104Family d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase [55832] (4 protein domains)
  6. 2190399Protein automated matches [190469] (15 species)
    not a true protein
  7. 2190521Species Trichinella spiralis [TaxId:6334] [226731] (2 PDB entries)
  8. 2299752Domain d5m4za_: 5m4z A: [343053]
    automated match to d4irra_
    complexed with 7k8, gol

Details for d5m4za_

PDB Entry: 5m4z (more details), 1.18 Å

PDB Description: crystal structure of the complex of t.spiralis thymidylate synthase with n(4)-hydroxy-2'-deoxycytidine-5'-monophosphate, crystallized in the presence of n(5,10)-methylenetetrahydrofolate
PDB Compounds: (A:) Thymidylate synthase

SCOPe Domain Sequences for d5m4za_:

Sequence, based on SEQRES records: (download)

>d5m4za_ d.117.1.0 (A:) automated matches {Trichinella spiralis [TaxId: 6334]}
yvnqeelnylnqlkdiidhgvrkndrtgigtlstfgtqsryclrddifpllttkrvfwrg
vveellwfisgstnakqlseknvniwdgnssrefldsrglynyeegdlgpvygfqwrhfg
cpyssmtadykgkgydqlqqcikmireepesrriimtawnpcdlekvalppchcfvqfyv
adgelscqmyqrsadmglgvpfniasyslltrmiahitslkpgffihtigdahvylthvd
alkvqmerkprpfpklkilrnveniddfraedfelinykpypkismpmav

Sequence, based on observed residues (ATOM records): (download)

>d5m4za_ d.117.1.0 (A:) automated matches {Trichinella spiralis [TaxId: 6334]}
yvnqeelnylnqlkdiidhgvrkngigtlstfgtqsryclrddifpllttkrvfwrgvve
ellwfisgstnakqlseknvniwdgnssrefldsrglynyeegdlgpvygfqwrhfgcpy
ssmtadykgkgydqlqqcikmireepesrriimtawnpcdlekvalppchcfvqfyvadg
elscqmyqrsadmglgvpfniasyslltrmiahitslkpgffihtigdahvylthvdalk
vqmerkprpfpklkilrnveniddfraedfelinykpypkismpmav

SCOPe Domain Coordinates for d5m4za_:

Click to download the PDB-style file with coordinates for d5m4za_.
(The format of our PDB-style files is described here.)

Timeline for d5m4za_:

  • d5m4za_ appears in periodic updates to SCOPe 2.06 starting on 2017-12-21