Lineage for d5on1a_ (5on1 A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2144293Family c.94.1.1: Phosphate binding protein-like [53851] (45 protein domains)
  6. 2144986Protein Nickel-binding periplasmic protein NikA [102694] (2 species)
    similar domain organization to oligo- and dipeptide-binding protein
  7. 2144991Species Escherichia coli [TaxId:562] [102695] (26 PDB entries)
  8. 2299595Domain d5on1a_: 5on1 A: [342896]
    automated match to d1zlqa1
    complexed with 9yk, act, cl, dtd, fe, gol, so4

Details for d5on1a_

PDB Entry: 5on1 (more details), 1.7 Å

PDB Description: crystal structure of nika in complex with hydroxylated fe-l1 (n-(2- hydroxybenzyl)-n'-(2-thiomethylbenzyl)-n,n'-ethylenediamine diacetic acid)
PDB Compounds: (A:) Nickel-binding periplasmic protein

SCOPe Domain Sequences for d5on1a_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5on1a_ c.94.1.1 (A:) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]}
apdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgk
twtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqit
lksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrn
enywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtq
lsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpya
nlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiq
admrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqa
qqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelg
nipyapiateipfeqikp

SCOPe Domain Coordinates for d5on1a_:

Click to download the PDB-style file with coordinates for d5on1a_.
(The format of our PDB-style files is described here.)

Timeline for d5on1a_:

  • d5on1a_ appears in periodic updates to SCOPe 2.06 starting on 2017-12-14