SCOPe 2.08: Domain d1av6a_: 1av6 A:

Lineage for d1av6a_ (1av6 A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.25: mRNA cap methylase [88785] (4 proteins)

6. Protein Polymerase regulatory subunit VP39 [53361] (2 species)

7. Species Vaccinia virus [TaxId:10245] [53362] (17 PDB entries)

8. Domain d1av6a_: 1av6 A: [34218]
   protein/RNA complex; complexed with mgt, sah

Details for d1av6a_

PDB Entry: 1av6, 2.8 Å

PDB Description: vaccinia methyltransferase vp39 complexed with m7g capped rna hexamer and s-adenosylhomocysteine

PDB Compounds: (A:) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase

SCOPe Domain Sequences for d1av6a_:

Sequence, based on SEQRES records:

>d1av6a_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
vvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgildga
tvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeeylr
sikkqlhpskiilisdvrskrggnepstadllsnyalqnvmisilnpvasslkwrcpfpd
qwikdfyiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnki
vrnkvvvnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Sequence, based on observed residues (ATOM records):

>d1av6a_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
vvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgildga
tvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeeylr
sikkqlhpskiilisdvrspstadllsnyalqnvmisilnpvasslkwrcpfpdqwikdf
yiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnkivrnkvv
vnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Timeline for d1av6a_:

• d1av6a_ first appeared (with stable ids) in SCOP 1.55
  
• d1av6a_ appears in SCOPe 2.07