SCOPe 2.06: Domain d5ygma_: 5ygm A:

Lineage for d5ygma_ (5ygm A:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
   sandwich; 12-14 strands in 2 sheets; complex topology

4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families)

5. Family b.29.1.1: Legume lectins [49900] (5 proteins)

6. Protein Concanavalin A [49901] (4 species)
   natural circle permutation: the "old" N- and C-termini are linked with a peptide bond, whereas the "new" ones correspond to a cleaved loop

7. Species Brazilian jackbean (Canavalia brasiliensis) [TaxId:61861] [49903] (7 PDB entries)

8. Domain d5ygma_: 5ygm A: [340795]
   automated match to d1nlsa_
   complexed with ca, mn

Details for d5ygma_

PDB Entry: 5ygm, 1.6 Å

PDB Description: monomeric structure of concanavalin a at ph 7.5 from carnivalia ensiformis

PDB Compounds: (A:) Concanavalin-Br

SCOPe Domain Sequences for d5ygma_:

Sequence; same for both SEQRES and ATOM records:

>d5ygma_ b.29.1.1 (A:) Concanavalin A {Brazilian jackbean (Canavalia brasiliensis) [TaxId: 61861]}
adtivaveldtypntdigdpsyphigidiksvrskktakwnmqngkvgtahiiynsvdkr
lsavvsypnadsatvsydvdldnvlpewvrvglsastglyketntilswsftsklksnst
hetnalhfmfnqfskdqkdlilqgdattgtdgnleltrvssngspqgssvgralfyapvh
iwessavvasfeatftflikspdshpadgiaffisnidssipsgstgrllglfpdan

Timeline for d5ygma_:

• d5ygma_ is new in SCOPe 2.06-stable
  
• d5ygma_ appears in SCOPe 2.07
  
• d5ygma_ appears in the current release, SCOPe 2.08