Lineage for d5ygma_ (5ygm A:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2042196Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. 2042197Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families) (S)
  5. 2042198Family b.29.1.1: Legume lectins [49900] (5 protein domains)
  6. 2042202Protein Concanavalin A [49901] (4 species)
    natural circle permutation: the "old" N- and C-termini are linked with a peptide bond, whereas the "new" ones correspond to a cleaved loop
  7. 2042203Species Brazilian jackbean (Canavalia brasiliensis) [TaxId:61861] [49903] (7 PDB entries)
  8. 2297494Domain d5ygma_: 5ygm A: [340795]
    automated match to d1nlsa_
    complexed with ca, mn

Details for d5ygma_

PDB Entry: 5ygm (more details), 1.6 Å

PDB Description: monomeric structure of concanavalin a at ph 7.5 from carnivalia ensiformis
PDB Compounds: (A:) Concanavalin-Br

SCOPe Domain Sequences for d5ygma_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5ygma_ b.29.1.1 (A:) Concanavalin A {Brazilian jackbean (Canavalia brasiliensis) [TaxId: 61861]}

SCOPe Domain Coordinates for d5ygma_:

Click to download the PDB-style file with coordinates for d5ygma_.
(The format of our PDB-style files is described here.)

Timeline for d5ygma_:

  • d5ygma_ appears in periodic updates to SCOPe 2.06 starting on 2017-10-29