SCOPe 2.06: Domain d5okgd_: 5okg D:

Lineage for d5okgd_ (5okg D:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.0: automated matches [191314] (1 protein)
   not a true family

6. Protein automated matches [190075] (90 species)
   not a true protein

7. Species Geobacillus stearothermophilus [TaxId:1422] [319127] (17 PDB entries)

8. Domain d5okgd_: 5okg D: [340589]
   automated match to d1pbga_
   complexed with bg6, gol, imd, xyt; mutant

Details for d5okgd_

PDB Entry: 5okg, 1.25 Å

PDB Description: non-conservatively refined structure of gan1d-e170q, a catalytic mutant of a putative 6-phospho-beta-galactosidase from geobacillus stearothermophilus, in complex with cellobiose-6-phosphate

PDB Compounds: (D:) Putative 6-phospho-beta-galactobiosidase

SCOPe Domain Sequences for d5okgd_:

Sequence, based on SEQRES records:

>d5okgd_ c.1.8.0 (D:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
rhlkpfppeflwgaasaayqvegawnedgkglsvwdvfakqpgrtfkgtngdvavdhyhr
yqedvalmaemglkayrfsvswsrvfpdgngavnekgldfydrlieelrnhgiepivtly
hwdvpqalmdaygawesrriiddfdryavtlfqrfgdrvkywvtlnqqnifisfgyrlgl
hppgvkdmkrmyeanhianlanakviqsfrhyvpdgkigpsfayspmypydsrpenvlaf
enaeefqnhwwmdvyawgmypqaawnylesqgleptvapgdwellqaakpdfmgvnyyqt
ttvehnppdgvgegvmnttgkkgtstssgipglfktvrnphvdttnwdwaidpvglrigl
rrianryqlpilitenglgefdtlepgdivnddyridylrrhvqeiqraitdgvdvlgyc
awsftdllswlngyqkrygfvyvnrddesekdlrrikkksfywyqrvietngael

Sequence, based on observed residues (ATOM records):

>d5okgd_ c.1.8.0 (D:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
rhlkpfppeflwgaasaayqvegawnedgkglsvwdvfakqpgrtfkgtngdvavdhyhr
yqedvalmaemglkayrfsvswsrvfpdgngavnekgldfydrlieelrnhgiepivtly
hwdvpqalmdaygawesrriiddfdryavtlfqrfgdrvkywvtlnqqnifisfgyrlgl
hppgvkdmkrmyeanhianlanakviqsfrhyvpdgkigpsfayspmypydsrpenvlaf
enaeefqnhwwmdvyawgmypqaawnylesqgleptvapgdwellqaakpdfmgvnyyqt
ttvehnppdgvgtssgipglfktvrnphvdttnwdwaidpvglriglrrianryqlpili
tenglgefdtlepgdivnddyridylrrhvqeiqraitdgvdvlgycawsftdllswlng
yqkrygfvyvnrddesekdlrrikkksfywyqrvietngael

Timeline for d5okgd_:

• d5okgd_ is new in SCOPe 2.06-stable
  
• d5okgd_ appears in SCOPe 2.07
  
• d5okgd_ appears in the current release, SCOPe 2.08