SCOPe 2.07: Domain d5kd7i1: 5kd7 I:2-181

Lineage for d5kd7i1 (5kd7 I:2-181)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
   dimeric

4. Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families)

5. Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)

6. Protein Class I MHC, alpha-1 and alpha-2 domains [54468] (29 species)

7. Species Mouse (Mus musculus), H-2DD [TaxId:10090] [54485] (23 PDB entries)

8. Domain d5kd7i1: 5kd7 I:2-181 [339986]
   Other proteins in same PDB: d5kd7a2, d5kd7b_, d5kd7c2, d5kd7d1, d5kd7d2, d5kd7f2, d5kd7g1, d5kd7g2, d5kd7i2, d5kd7j1, d5kd7j2
   automated match to d1qo3a2
   complexed with edo, gol

Details for d5kd7i1

PDB Entry: 5kd7, 2.35 Å

PDB Description: crystal structure of murine mhc-i h-2dd in complex with murine beta2- microglobulin and a variant of peptide (pv9) of hiv gp120 mn isolate (igpgrafyv)

PDB Compounds: (I:) H-2 class I histocompatibility antigen, D-D alpha chain

SCOPe Domain Sequences for d5kd7i1:

Sequence, based on SEQRES records:

>d5kd7i1 d.19.1.1 (I:2-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2DD [TaxId: 10090]}
shslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeywe
retrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydgc
dyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatllr

Sequence, based on observed residues (ATOM records):

>d5kd7i1 d.19.1.1 (I:2-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2DD [TaxId: 10090]}
shslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeywe
retrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdrllrgywqfaydgcd
yialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatllr

Timeline for d5kd7i1:

• d5kd7i1 first appeared in SCOPe 2.06
  
• d5kd7i1 appears in the current release, SCOPe 2.08