Lineage for d5o04e_ (5o04 E:)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2023921Protein automated matches [190119] (22 species)
    not a true protein
  7. 2025070Species Vicugna pacos [TaxId:30538] [189756] (35 PDB entries)
  8. 2025109Domain d5o04e_: 5o04 E: [339821]
    Other proteins in same PDB: d5o04c2
    automated match to d4ldeb_
    complexed with edo

Details for d5o04e_

PDB Entry: 5o04 (more details), 2.3 Å

PDB Description: gii.10 vietnam 026 norovirus protruding domain in complex with nanobody nano-26 and nano-85
PDB Compounds: (E:) Nanobody (VHH) Nano-26

SCOPe Domain Sequences for d5o04e_:

Sequence, based on SEQRES records: (download)

>d5o04e_ b.1.1.1 (E:) automated matches {Vicugna pacos [TaxId: 30538]}
qvqlqesggglvqpggslrlsctapriiffmydvgwyrqapekqrelvaqinsdvstkya
dsvkgrftisrdnakrtvylqmndlkpedaavyycnvrrasadywgqgtqvtvs

Sequence, based on observed residues (ATOM records): (download)

>d5o04e_ b.1.1.1 (E:) automated matches {Vicugna pacos [TaxId: 30538]}
qvqlqesggglvqpslrlsctapriiffmydvgwyrqapekqrelvaqinsdvstkyads
vkgrftisrdnakrtvylqmndlkpedaavyycnvrrasadywgqgtqvtvs

SCOPe Domain Coordinates for d5o04e_:

Click to download the PDB-style file with coordinates for d5o04e_.
(The format of our PDB-style files is described here.)

Timeline for d5o04e_: