Lineage for d5vida2 (5vid A:1067-1291)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2061457Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2062236Superfamily b.42.4: STI-like [50386] (3 families) (S)
  5. 2062297Family b.42.4.2: Clostridium neurotoxins, C-terminal domain [50399] (3 proteins)
    overall fold is very similar to that of the STI family
    automatically mapped to Pfam PF07951
  6. 2062298Protein Botulinum neurotoxin [50402] (2 species)
  7. 2062299Species Clostridium botulinum, serotype A [TaxId:1491] [50403] (6 PDB entries)
  8. 2062306Domain d5vida2: 5vid A:1067-1291 [339357]
    Other proteins in same PDB: d5vida1, d5vidb1, d5vidc1, d5vidd1, d5vide1
    automated match to d2nm1a2

Details for d5vida2

PDB Entry: 5vid (more details), 2.75 Å

PDB Description: receptor binding domain of bont/b in complex with mini-protein binder bot.0671.2
PDB Compounds: (A:) botulinum neurotoxin type b

SCOPe Domain Sequences for d5vida2:

Sequence, based on SEQRES records: (download)

>d5vida2 b.42.4.2 (A:1067-1291) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
sqsnieerykiqsyseylkdfwgnplmynkeyymfnagnknsyiklkkdspvgeiltrsk
ynqnskyinyrdlyigekfiirrksnsqsinddivrkedyiyldffnlnqewrvytykyf
kkeeeklflapisdsdefyntiqikeydeqptyscqllfkkdeestdeigligihrfyes
givfeeykdyfciskwylkevkrkpynlklgcnwqfipkdegwte

Sequence, based on observed residues (ATOM records): (download)

>d5vida2 b.42.4.2 (A:1067-1291) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
sqsnieerykiqsyseylkdfwgnplmynkeyymfnagnknsyiklkkdspvgeiltrsk
ynqnskyinyrdlyigekfiirrksdivrkedyiyldffnlnqewrvytykyfkkeeekl
flapisdsdefyntiqikeydeqptyscqllfkkdeestdeigligihrfyesgivfeey
kdyfciskwylkevkrkpynlklgcnwqfipkdegwte

SCOPe Domain Coordinates for d5vida2:

Click to download the PDB-style file with coordinates for d5vida2.
(The format of our PDB-style files is described here.)

Timeline for d5vida2: