SCOPe 2.08: Domain d5vidb2: 5vid B:1067-1291

Lineage for d5vidb2 (5vid B:1067-1291)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.42: beta-Trefoil [50352] (8 superfamilies)
   barrel, closed; n=6, S=12; and a hairpin triplet; meander
   duplication: has internal pseudo threefold symmetry

4. Superfamily b.42.4: STI-like [50386] (3 families)

5. Family b.42.4.2: Clostridium neurotoxins, C-terminal domain [50399] (3 proteins)
   overall fold is very similar to that of the STI family
   automatically mapped to Pfam PF07951

6. Protein Botulinum neurotoxin [50402] (2 species)

7. Species Clostridium botulinum, serotype A [TaxId:1491] [50403] (10 PDB entries)

8. Domain d5vidb2: 5vid B:1067-1291 [339353]
   Other proteins in same PDB: d5vida1, d5vidb1, d5vidc1, d5vidd1, d5vide1
   automated match to d2nm1a2

Details for d5vidb2

PDB Entry: 5vid, 2.75 Å

PDB Description: receptor binding domain of bont/b in complex with mini-protein binder bot.0671.2

PDB Compounds: (B:) botulinum neurotoxin type b

SCOPe Domain Sequences for d5vidb2:

Sequence, based on SEQRES records:

>d5vidb2 b.42.4.2 (B:1067-1291) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
sqsnieerykiqsyseylkdfwgnplmynkeyymfnagnknsyiklkkdspvgeiltrsk
ynqnskyinyrdlyigekfiirrksnsqsinddivrkedyiyldffnlnqewrvytykyf
kkeeeklflapisdsdefyntiqikeydeqptyscqllfkkdeestdeigligihrfyes
givfeeykdyfciskwylkevkrkpynlklgcnwqfipkdegwte

Sequence, based on observed residues (ATOM records):

>d5vidb2 b.42.4.2 (B:1067-1291) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
sqsnieerykiqsyseylkdfwgnplmynkeyymfnagnknsyiklkkdspvgeiltrsk
ynqnskyinyrdlyigekfiirrkssinddivrkedyiyldffnlnqewrvytykyfkke
eeklflapisdsdefyntiqikeydeqptyscqllfkkdeestdeigligihrfyeeykd
yfciskwylkevkrkpynlklgcnwqfipkdegwte

Timeline for d5vidb2:

• d5vidb2 first appeared in SCOPe 2.06
  
• d5vidb2 appears in SCOPe 2.07