Lineage for d5vidb1 (5vid B:862-1066)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2049732Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. 2049733Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families) (S)
  5. 2051091Family b.29.1.6: Clostridium neurotoxins, the second last domain [49956] (3 proteins)
    automatically mapped to Pfam PF07953
  6. 2051092Protein Botulinum neurotoxin [49959] (2 species)
  7. 2051093Species Clostridium botulinum, serotype A [TaxId:1491] [49960] (6 PDB entries)
  8. 2051101Domain d5vidb1: 5vid B:862-1066 [339352]
    Other proteins in same PDB: d5vida2, d5vidb2, d5vidc2, d5vidd2, d5vide2
    automated match to d2nm1a1

Details for d5vidb1

PDB Entry: 5vid (more details), 2.75 Å

PDB Description: receptor binding domain of bont/b in complex with mini-protein binder bot.0671.2
PDB Compounds: (B:) botulinum neurotoxin type b

SCOPe Domain Sequences for d5vidb1:

Sequence, based on SEQRES records: (download)

>d5vidb1 b.29.1.6 (B:862-1066) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
nniilnlrykdnnlidlsgygakvevydgvelndknqfkltssanskirvtqnqniifns
vfldfsvsfwiripkykndgiqnyihneytiincmknnsgwkisirgnriiwtlidingk
tksvffeynirediseyinrwffvtitnnlnnakiyingklesntdikdireviangeii
fkldgdidrtqfiwmkyfsifntel

Sequence, based on observed residues (ATOM records): (download)

>d5vidb1 b.29.1.6 (B:862-1066) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
nniilnlrykdnnlidlsgygakvevydgvelndknqfkltssanskirvtqnldfsvsf
wiripkykndgiqnyihneytiincmknnsgwkisirgnriiwtlidingktksvffeyn
irediseyinrwffvtitnnlnnakiyingklesntdikdireviangeiifkldgdidr
tqfiwmkyfsifntel

SCOPe Domain Coordinates for d5vidb1:

Click to download the PDB-style file with coordinates for d5vidb1.
(The format of our PDB-style files is described here.)

Timeline for d5vidb1: