Lineage for d5m2ja_ (5m2j A:)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2048772Fold b.22: TNF-like [49841] (1 superfamily)
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. 2048773Superfamily b.22.1: TNF-like [49842] (2 families) (S)
  5. 2048774Family b.22.1.1: TNF-like [49843] (15 proteins)
  6. 2048971Protein Tumor necrosis factor (TNF) [49848] (2 species)
  7. 2048972Species Human (Homo sapiens) [TaxId:9606] [49849] (19 PDB entries)
  8. 2048980Domain d5m2ja_: 5m2j A: [338571]
    Other proteins in same PDB: d5m2jd_
    automated match to d1a8ma_

Details for d5m2ja_

PDB Entry: 5m2j (more details), 1.9 Å

PDB Description: complex between human tnf alpha and llama vhh2
PDB Compounds: (A:) Tumor necrosis factor

SCOPe Domain Sequences for d5m2ja_:

Sequence, based on SEQRES records: (download)

>d5m2ja_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo sapiens) [TaxId: 9606]}
sdkpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfkgqg
cpsthvllthtisriavsyqtkvnllsaikspcqretpegaeakpwyepiylggvfqlek
gdrlsaeinrpdyldfaesgqvyfgiial

Sequence, based on observed residues (ATOM records): (download)

>d5m2ja_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo sapiens) [TaxId: 9606]}
sdkpvahvvanpqaegqlqwlnrranallangvelrdnqlvvpseglyliysqvlfkgqg
cpsthvllthtisriavsyqtkvnllsaikspcqpwyepiylggvfqlekgdrlsaeinr
pdyldfaesgqvyfgiial

SCOPe Domain Coordinates for d5m2ja_:

Click to download the PDB-style file with coordinates for d5m2ja_.
(The format of our PDB-style files is described here.)

Timeline for d5m2ja_:

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d5m2jd_