SCOPe 2.08: Domain d5lpsa_: 5lps A:

Lineage for d5lpsa_ (5lps A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (156 PDB entries)
   Uniprot P28720

8. Domain d5lpsa_: 5lps A: [338561]
   automated match to d1p0ba_
   protein/RNA complex; complexed with 726, edo, zn

Details for d5lpsa_

PDB Entry: 5lps, 1.27 Å

PDB Description: trna guanine transglycosylase (tgt) in co-crystallized complex (space group c2) with 6-amino-2-(methylamino)-4-(2-((2r,3r,4s,5r,6s)-3,4,5, 6-tetramethoxytetrahydro-2h-pyran-2-yl)ethyl)-1h-imidazo[4,5- g]quinazolin-8(7h)-one

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d5lpsa_:

Sequence, based on SEQRES records:

>d5lpsa_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryfa

Sequence, based on observed residues (ATOM records):

>d5lpsa_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatgadiilgntyhlmlrpgaer
iaklgglhsfmgwdrpiltdsggyqseegvtfkshldgsrhmlspersieiqhllgsdiv
mafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvfenlrq
qsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpddivgav
ergidmfdcvlptrsngqaftwdgpinirnarfsedlkpldskwsrayihhlirageilg
amlmtehniafyqqlmqkirdsisegrfsqfaqdfraryfa

Timeline for d5lpsa_:

• d5lpsa_ first appeared in SCOPe 2.06
  
• d5lpsa_ appears in SCOPe 2.07