SCOPe 2.06: Domain d5kybb_: 5kyb B:

Lineage for d5kybb_ (5kyb B:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.9: Ubiquitin carboxyl-terminal hydrolase, UCH [82568] (6 proteins)
   Pfam PF00443

6. Protein automated matches [191167] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [189384] (17 PDB entries)

8. Domain d5kybb_: 5kyb B: [337555]
   automated match to d1nbfa_
   complexed with gol; mutant

Details for d5kybb_

PDB Entry: 5kyb, 2.2 Å

PDB Description: crystal structure of the apo-form of usp7 catalytic domain [v302k] mutant

PDB Compounds: (B:) Ubiquitin carboxyl-terminal hydrolase 7

SCOPe Domain Sequences for d5kybb_:

Sequence, based on SEQRES records:

>d5kybb_ d.3.1.9 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
khtgyvglknqgatcymnsllqtlfftnqlrkavymmptegddssksvplalqrvfyelq
hsdkpvgtkkltksfgwetldsfmqhdvqelcrklldnvenkmkgtcvegtipklfrgkm
vsyiqckevdyrsdrredyydiqlsikgkknifesfvdyvaveqldgdnkydagehglqe
aekgvkfltlppvlhlqlmrfmydpqtdqnikindrfefpeqlpldeflqktdpkdpany
ilhavlvhsgdnhgghyvvylnpkgdgkwckfdddvvsrctkeeaiehnygghdddlsvr
hctnaymlvyiresklsevlqavtdhdipqqlverlqeekrieaq

Sequence, based on observed residues (ATOM records):

>d5kybb_ d.3.1.9 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
khtgyvglknqgatcymnsllqtlfftnqlrkavymmptegddssksvplalqrvfyelq
hsdkpvgtkkltksfgwetldsfmqhdvqelcrklldnvenkmkgtcvegtipklfrgkm
vsyiqckevdyrsdrredyydiqlsikgkknifesfvdyvaveqldgdnkydagehglqe
aekgvkfltlppvlhlqlmrfmynikindrfefpeqlpldeflqktdpkdpanyilhavl
vhsgdnhgghyvvylnpkgdgkwckfdddvvsrctkeeaiehnygghhctnaymlvyire
sklsevlqavtdhdipqqlverlqeekrieaq

Timeline for d5kybb_:

• d5kybb_ is new in SCOPe 2.06-stable
  
• d5kybb_ appears in SCOPe 2.07
  
• d5kybb_ appears in the current release, SCOPe 2.08