Lineage for d5xl4b_ (5xl4 B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2040266Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 2040267Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 2040896Family b.19.1.0: automated matches [227246] (1 protein)
    not a true family
  6. 2040897Protein automated matches [227017] (33 species)
    not a true protein
  7. 2293999Species Influenza a virus (strain a/duck/czechoslovakia/1956 h4n6) [TaxId:385590] [337300] (9 PDB entries)
  8. 2294096Domain d5xl4b_: 5xl4 B: [337397]
    Other proteins in same PDB: d5xl4c_, d5xl4d_
    automated match to d4uoaa_
    complexed with nag, sia

Details for d5xl4b_

PDB Entry: 5xl4 (more details), 2.1 Å

PDB Description: the structure of hemagglutinin from an avian-origin h4n6 influenza virus in complex with human receptor analog lstc
PDB Compounds: (B:) Hemagglutinin

SCOPe Domain Sequences for d5xl4b_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5xl4b_ b.19.1.0 (B:) automated matches {Influenza a virus (strain a/duck/czechoslovakia/1956 h4n6) [TaxId: 385590]}
gnpvicmghhavangtmvktladdqvevvtaqelvesqnlpelcpsplrlvdgqtcdiin
galgspgcdhlngaewdvfierpnavdtcypfdvpeyqslrsilanngkfefiaeefqwn
tvkqngksgackranvndffnrlnwlvksdgnayplqnltkinngdyarlyiwgvhhpst
dteqtnlyknnpggvtvstktsqtsvvpnigsrplvrgqsgrvsfywtivepgdlivfnt
ignliaprghyklnnqkkstilntaipigscvskchtdkgslsttkpfqnisriavgdcp
ryvkqgslklatgmrnipe

SCOPe Domain Coordinates for d5xl4b_:

Click to download the PDB-style file with coordinates for d5xl4b_.
(The format of our PDB-style files is described here.)

Timeline for d5xl4b_:

  • d5xl4b_ appears in periodic updates to SCOPe 2.06 starting on 2017-08-03