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Lineage for d5vypk1 (5vyp K:1-46)

  1. Root: SCOPe 2.06
  2. 2229111Class g: Small proteins [56992] (94 folds)
  3. 2229389Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
    disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
  4. 2229881Superfamily g.3.7: Scorpion toxin-like [57095] (6 families) (S)
  5. 2230174Family g.3.7.5: Plant defensins [57170] (9 protein domains)
  6. 2230227Protein automated matches [191215] (9 species)
    not a true protein
  7. 2293969Species Nicotiana suaveolens [TaxId:200320] [337270] (1 PDB entry)
  8. 2294079Domain d5vypk1: 5vyp K:1-46 [337380]
    Other proteins in same PDB: d5vypb2, d5vypc2, d5vypd2, d5vype2, d5vypf2, d5vypg2, d5vyph2, d5vypi2, d5vypj2, d5vypk2, d5vypo2, d5vypp2, d5vypq2, d5vypr2, d5vyps2, d5vypt2, d5vypu2, d5vypv2, d5vypw2, d5vypx2
    automated match to d1mr4a_
    complexed with gol, pio, so4

Details for d5vypk1

PDB Entry: 5vyp (more details), 2.6 Å

PDB Description: crystal structure of the plant defensin nsd7 bound to pip2
PDB Compounds: (K:) Defensin NsD7

SCOPe Domain Sequences for d5vypk1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vypk1 g.3.7.5 (K:1-46) automated matches {Nicotiana suaveolens [TaxId: 200320]}
kdckresntfpgicitkppcrkacirekftdghcskilrrclctkp

SCOPe Domain Coordinates for d5vypk1:

Click to download the PDB-style file with coordinates for d5vypk1.
(The format of our PDB-style files is described here.)

Timeline for d5vypk1:

  • d5vypk1 appears in periodic updates to SCOPe 2.06 starting on 2017-08-03

View in 3D
Domains from same chain:
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d5vypk2
View in 3D
Domains from other chains:
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d5vypa_, d5vypb1, d5vypb2, d5vypc1, d5vypc2, d5vypd1, d5vypd2, d5vype1, d5vype2, d5vypf1, d5vypf2, d5vypg1, d5vypg2, d5vyph1, d5vyph2, d5vypi1, d5vypi2, d5vypj1, d5vypj2, d5vypl_, d5vypm_, d5vypn_, d5vypo1, d5vypo2, d5vypp1, d5vypp2, d5vypq1, d5vypq2, d5vypr1, d5vypr2, d5vyps1, d5vyps2, d5vypt1, d5vypt2, d5vypu1, d5vypu2, d5vypv1, d5vypv2, d5vypw1, d5vypw2, d5vypx1, d5vypx2