SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5vype1 (5vyp E:1-47)

  1. Root: SCOPe 2.06
  2. 2229111Class g: Small proteins [56992] (94 folds)
  3. 2229389Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
    disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
  4. 2229881Superfamily g.3.7: Scorpion toxin-like [57095] (6 families) (S)
  5. 2230174Family g.3.7.5: Plant defensins [57170] (9 protein domains)
  6. 2230227Protein automated matches [191215] (9 species)
    not a true protein
  7. 2293969Species Nicotiana suaveolens [TaxId:200320] [337270] (1 PDB entry)
  8. 2294001Domain d5vype1: 5vyp E:1-47 [337302]
    Other proteins in same PDB: d5vypb2, d5vypc2, d5vypd2, d5vype2, d5vypf2, d5vypg2, d5vyph2, d5vypi2, d5vypj2, d5vypk2, d5vypo2, d5vypp2, d5vypq2, d5vypr2, d5vyps2, d5vypt2, d5vypu2, d5vypv2, d5vypw2, d5vypx2
    automated match to d1mr4a_
    complexed with gol, pio, so4

Details for d5vype1

PDB Entry: 5vyp (more details), 2.6 Å

PDB Description: crystal structure of the plant defensin nsd7 bound to pip2
PDB Compounds: (E:) Defensin NsD7

SCOPe Domain Sequences for d5vype1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vype1 g.3.7.5 (E:1-47) automated matches {Nicotiana suaveolens [TaxId: 200320]}
kdckresntfpgicitkppcrkacirekftdghcskilrrclctkpc

SCOPe Domain Coordinates for d5vype1:

Click to download the PDB-style file with coordinates for d5vype1.
(The format of our PDB-style files is described here.)

Timeline for d5vype1:

  • d5vype1 appears in periodic updates to SCOPe 2.06 starting on 2017-08-03

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Domains from same chain:
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d5vype2
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Domains from other chains:
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d5vypa_, d5vypb1, d5vypb2, d5vypc1, d5vypc2, d5vypd1, d5vypd2, d5vypf1, d5vypf2, d5vypg1, d5vypg2, d5vyph1, d5vyph2, d5vypi1, d5vypi2, d5vypj1, d5vypj2, d5vypk1, d5vypk2, d5vypl_, d5vypm_, d5vypn_, d5vypo1, d5vypo2, d5vypp1, d5vypp2, d5vypq1, d5vypq2, d5vypr1, d5vypr2, d5vyps1, d5vyps2, d5vypt1, d5vypt2, d5vypu1, d5vypu2, d5vypv1, d5vypv2, d5vypw1, d5vypw2, d5vypx1, d5vypx2