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Lineage for d5vomb1 (5vom B:44-167)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1992366Fold a.29: Bromodomain-like [47363] (15 superfamilies)
    4 helices; bundle; minor mirror variant of up-and-down topology
  4. 1992367Superfamily a.29.2: Bromodomain [47370] (2 families) (S)
  5. 1992467Family a.29.2.0: automated matches [191428] (1 protein)
    not a true family
  6. 1992468Protein automated matches [190615] (10 species)
    not a true protein
  7. 1992472Species Human (Homo sapiens) [TaxId:9606] [187641] (625 PDB entries)
  8. 2293978Domain d5vomb1: 5vom B:44-167 [337279]
    Other proteins in same PDB: d5voma2, d5vomb2
    automated match to d5egub_
    complexed with 9gy

Details for d5vomb1

PDB Entry: 5vom (more details), 1.67 Å

PDB Description: benzopiperazine bet bromodomain inhibitor in complex with bd1 of brd4
PDB Compounds: (B:) Bromodomain-containing protein 4

SCOPe Domain Sequences for d5vomb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vomb1 a.29.2.0 (B:44-167) automated matches {Human (Homo sapiens) [TaxId: 9606]}
nppppetsnpnkpkrqtnqlqyllrvvlktlwkhqfawpfqqpvdavklnlpdyykiikt
pmdmgtikkrlennyywnaqeciqdfntmftncyiynkpgddivlmaealeklflqkine
lpte

SCOPe Domain Coordinates for d5vomb1:

Click to download the PDB-style file with coordinates for d5vomb1.
(The format of our PDB-style files is described here.)

Timeline for d5vomb1:

  • d5vomb1 appears in periodic updates to SCOPe 2.06 starting on 2017-08-03

View in 3D
Domains from same chain:
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d5vomb2