SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5vshd2 (5vsh D:107-211)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2020524Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 protein domains)
  6. 2024392Protein automated matches [190374] (14 species)
    not a true protein
  7. 2024406Species Human (Homo sapiens) [TaxId:9606] [187221] (633 PDB entries)
  8. 2293959Domain d5vshd2: 5vsh D:107-211 [337260]
    Other proteins in same PDB: d5vshb1, d5vshd1, d5vshf1, d5vshl1
    automated match to d1dn0a2
    complexed with so4

Details for d5vshd2

PDB Entry: 5vsh (more details), 2.55 Å

PDB Description: ch1/clambda fab based on pertuzumab
PDB Compounds: (D:) CH1/Clambda Fab light chain

SCOPe Domain Sequences for d5vshd2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vshd2 b.1.1.2 (D:107-211) automated matches {Human (Homo sapiens) [TaxId: 9606]}
krtvaapsvfifppskeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteq
dskdstyslsstltlskadyekhkvyacevthqglsspvtksfnr

SCOPe Domain Coordinates for d5vshd2:

Click to download the PDB-style file with coordinates for d5vshd2.
(The format of our PDB-style files is described here.)

Timeline for d5vshd2:

  • d5vshd2 appears in periodic updates to SCOPe 2.06 starting on 2017-08-03